Analysis of interatomic Contacts of Structural Units in PDB entry:
9TRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TRD entry

There are 18 chains in PDB entry 9TRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2HIS 446
B
 ILE 5LEU 439
C
 MET 1ILE 444
S
 T 7 C 33
D
 ASP 2HIS 446
E
 ILE 5TYR 250
F
 MET 1ASP 380
T
 C 20 A 23
G
 ASP 2HIS 446
H
 ILE 5TYR 250
I
 MET 1LEU 350
U
 C 21 A 23
J
 ASP 2HIS 446
K
 ILE 5TYR 250
L
 MET 1LEU 350
V
 C 20 A 23
M
 A 2 A 9
N
 U 2 U 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are277 helices in PDB entry 9TRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 13Right-handed alpha
Helix 2
AA2
A
17 33Right-handed alpha
Helix 3
AA3
A
35 61Right-handed alpha
Helix 4
AA4
A
64 81Right-handed alpha
Helix 5
AA5
A
85 99Right-handed alpha
Helix 6
AA6
A
103 122Right-handed alpha
Helix 7
AA7
A
135 150Right-handed alpha
Helix 8
AA8
A
154 159Right-handed 310
Helix 9
AA9
A
160 172Right-handed alpha
Helix 10
AB1
A
178 190Right-handed alpha
Helix 11
AB2
A
195 212Right-handed alpha
Helix 12
AB3
A
215 221Right-handed alpha
Helix 13
AB4
A
221 236Right-handed alpha
Helix 14
AB5
A
236 247Right-handed alpha
Helix 15
AB6
A
247 252Right-handed alpha
Helix 16
AB7
A
257 268Right-handed alpha
Helix 17
AB8
A
271 277Right-handed alpha
Helix 18
AB9
A
279 293Right-handed alpha
Helix 19
AC1
A
293 300Right-handed alpha
Helix 20
AC2
A
301 304Right-handed 310
Helix 21
AC3
A
306 322Right-handed alpha
Helix 22
AC4
A
334 348Right-handed alpha
Helix 23
AC5
A
350 364Right-handed alpha
Helix 24
AC6
A
367 378Right-handed alpha
Helix 25
AC7
A
387 401Right-handed alpha
Helix 26
AC8
A
401 406Right-handed alpha
Helix 27
AC9
A
407 412Right-handed alpha
Helix 28
AD1
A
414 427Right-handed alpha
Helix 29
AD2
A
432 436Right-handed 310
Helix 30
AD3
A
440 445Right-handed 310
Helix 31
AD4
B
7 12Right-handed alpha
Helix 32
AD5
B
17 34Right-handed alpha
Helix 33
AD6
B
35 61Right-handed alpha
Helix 34
AD7
B
64 81Right-handed alpha
Helix 35
AD8
B
85 99Right-handed alpha
Helix 36
AD9
B
103 122Right-handed alpha
Helix 37
AE1
B
135 150Right-handed alpha
Helix 38
AE2
B
159 172Right-handed alpha
Helix 39
AE3
B
178 190Right-handed alpha
Helix 40
AE4
B
191 194Right-handed 310
Helix 41
AE5
B
195 211Right-handed alpha
Helix 42
AE6
B
215 221Right-handed alpha
Helix 43
AE7
B
221 236Right-handed alpha
Helix 44
AE8
B
237 245Right-handed alpha
Helix 45
AE9
B
248 253Right-handed alpha
Helix 46
AF1
B
257 268Right-handed alpha
Helix 47
AF2
B
286 293Right-handed alpha
Helix 48
AF3
B
293 299Right-handed alpha
Helix 49
AF4
B
306 321Right-handed alpha
Helix 50
AF5
B
334 349Right-handed alpha
Helix 51
AF6
B
350 364Right-handed alpha
Helix 52
AF7
B
367 378Right-handed alpha
Helix 53
AF8
B
387 401Right-handed alpha
Helix 54
AF9
B
401 406Right-handed alpha
Helix 55
AG1
B
414 427Right-handed alpha
Helix 56
AG2
C
2 13Right-handed alpha
Helix 57
AG3
C
17 33Right-handed alpha
Helix 58
AG4
C
35 63Right-handed alpha
Helix 59
AG5
C
64 81Right-handed alpha
Helix 60
AG6
C
85 99Right-handed alpha
Helix 61
AG7
C
103 122Right-handed alpha
Helix 62
AG8
C
135 150Right-handed alpha
Helix 63
AG9
C
160 172Right-handed alpha
Helix 64
AH1
C
178 190Right-handed alpha
Helix 65
AH2
C
195 212Right-handed alpha
Helix 66
AH3
C
215 221Right-handed alpha
Helix 67
AH4
C
221 236Right-handed alpha
Helix 68
AH5
C
236 247Right-handed alpha
Helix 69
AH6
C
257 268Right-handed alpha
Helix 70
AH7
C
271 278Right-handed alpha
Helix 71
AH8
C
279 293Right-handed alpha
Helix 72
AH9
C
294 299Right-handed alpha
Helix 73
AI1
C
300 304Right-handed 310
Helix 74
AI2
C
306 321Right-handed alpha
Helix 75
AI3
C
334 349Right-handed alpha
Helix 76
AI4
C
350 364Right-handed alpha
Helix 77
AI5
C
367 378Right-handed alpha
Helix 78
AI6
C
378 383Right-handed alpha
Helix 79
AI7
C
387 401Right-handed alpha
Helix 80
AI8
C
401 407Right-handed alpha
Helix 81
AI9
C
407 412Right-handed alpha
Helix 82
AJ1
C
414 426Right-handed alpha
Helix 83
AJ2
D
7 13Right-handed alpha
Helix 84
AJ3
D
17 33Right-handed alpha
Helix 85
AJ4
D
35 61Right-handed alpha
Helix 86
AJ5
D
64 81Right-handed alpha
Helix 87
AJ6
D
85 99Right-handed alpha
Helix 88
AJ7
D
103 122Right-handed alpha
Helix 89
AJ8
D
135 150Right-handed alpha
Helix 90
AJ9
D
154 159Right-handed 310
Helix 91
AK1
D
160 172Right-handed alpha
Helix 92
AK2
D
178 190Right-handed alpha
Helix 93
AK3
D
195 212Right-handed alpha
Helix 94
AK4
D
215 221Right-handed alpha
Helix 95
AK5
D
221 236Right-handed alpha
Helix 96
AK6
D
236 247Right-handed alpha
Helix 97
AK7
D
247 252Right-handed alpha
Helix 98
AK8
D
257 268Right-handed alpha
Helix 99
AK9
D
271 277Right-handed alpha
Helix 100
AL1
D
279 293Right-handed alpha
Helix 101
AL2
D
293 299Right-handed alpha
Helix 102
AL3
D
300 304Right-handed 310
Helix 103
AL4
D
306 322Right-handed alpha
Helix 104
AL5
D
334 348Right-handed alpha
Helix 105
AL6
D
350 364Right-handed alpha
Helix 106
AL7
D
367 378Right-handed alpha
Helix 107
AL8
D
378 383Right-handed alpha
Helix 108
AL9
D
384 386Right-handed 310
Helix 109
AM1
D
387 399Right-handed alpha
Helix 110
AM2
D
401 406Right-handed alpha
Helix 111
AM3
D
407 412Right-handed alpha
Helix 112
AM4
D
414 427Right-handed alpha
Helix 113
AM5
D
432 436Right-handed 310
Helix 114
AM6
D
441 445Right-handed 310
Helix 115
AM7
E
7 12Right-handed alpha
Helix 116
AM8
E
17 34Right-handed alpha
Helix 117
AM9
E
35 61Right-handed alpha
Helix 118
AN1
E
64 81Right-handed alpha
Helix 119
AN2
E
85 99Right-handed alpha
Helix 120
AN3
E
103 122Right-handed alpha
Helix 121
AN4
E
135 148Right-handed alpha
Helix 122
AN5
E
158 172Right-handed alpha
Helix 123
AN6
E
178 190Right-handed alpha
Helix 124
AN7
E
191 194Right-handed 310
Helix 125
AN8
E
195 210Right-handed alpha
Helix 126
AN9
E
215 221Right-handed alpha
Helix 127
AO1
E
221 236Right-handed alpha
Helix 128
AO2
E
237 245Right-handed alpha
Helix 129
AO3
F
2 13Right-handed alpha
Helix 130
AO4
F
17 33Right-handed alpha
Helix 131
AO5
F
35 63Right-handed alpha
Helix 132
AO6
F
64 81Right-handed alpha
Helix 133
AO7
F
85 99Right-handed alpha
Helix 134
AO8
F
103 122Right-handed alpha
Helix 135
AO9
F
135 150Right-handed alpha
Helix 136
AP1
F
160 172Right-handed alpha
Helix 137
AP2
F
178 190Right-handed alpha
Helix 138
AP3
F
195 212Right-handed alpha
Helix 139
AP4
F
215 221Right-handed alpha
Helix 140
AP5
F
221 236Right-handed alpha
Helix 141
AP6
F
236 247Right-handed alpha
Helix 142
AP7
F
257 268Right-handed alpha
Helix 143
AP8
F
271 278Right-handed alpha
Helix 144
AP9
F
279 293Right-handed alpha
Helix 145
AQ1
F
294 299Right-handed alpha
Helix 146
AQ2
F
306 309Right-handed 310
Helix 147
AQ3
F
310 321Right-handed alpha
Helix 148
AQ4
F
334 349Right-handed alpha
Helix 149
AQ5
F
350 364Right-handed alpha
Helix 150
AQ6
F
369 378Right-handed alpha
Helix 151
AQ7
G
7 13Right-handed alpha
Helix 152
AQ8
G
17 33Right-handed alpha
Helix 153
AQ9
G
35 61Right-handed alpha
Helix 154
AR1
G
64 81Right-handed alpha
Helix 155
AR2
G
85 99Right-handed alpha
Helix 156
AR3
G
103 122Right-handed alpha
Helix 157
AR4
G
135 150Right-handed alpha
Helix 158
AR5
G
154 159Right-handed 310
Helix 159
AR6
G
160 172Right-handed alpha
Helix 160
AR7
G
178 190Right-handed alpha
Helix 161
AR8
G
195 212Right-handed alpha
Helix 162
AR9
G
215 221Right-handed alpha
Helix 163
AS1
G
221 236Right-handed alpha
Helix 164
AS2
G
236 247Right-handed alpha
Helix 165
AS3
G
247 252Right-handed alpha
Helix 166
AS4
G
257 268Right-handed alpha
Helix 167
AS5
G
271 278Right-handed alpha
Helix 168
AS6
G
279 293Right-handed alpha
Helix 169
AS7
G
293 299Right-handed alpha
Helix 170
AS8
G
300 304Right-handed 310
Helix 171
AS9
G
306 322Right-handed alpha
Helix 172
AT1
G
334 348Right-handed alpha
Helix 173
AT2
G
350 364Right-handed alpha
Helix 174
AT3
G
367 378Right-handed alpha
Helix 175
AT4
G
378 383Right-handed alpha
Helix 176
AT5
G
387 399Right-handed alpha
Helix 177
AT6
G
401 406Right-handed alpha
Helix 178
AT7
G
407 412Right-handed alpha
Helix 179
AT8
G
414 427Right-handed alpha
Helix 180
AT9
G
432 436Right-handed 310
Helix 181
AU1
G
440 444Right-handed 310
Helix 182
AU2
H
7 12Right-handed alpha
Helix 183
AU3
H
17 34Right-handed alpha
Helix 184
AU4
H
35 61Right-handed alpha
Helix 185
AU5
H
64 81Right-handed alpha
Helix 186
AU6
H
85 99Right-handed alpha
Helix 187
AU7
H
103 122Right-handed alpha
Helix 188
AU8
H
135 150Right-handed alpha
Helix 189
AU9
H
158 172Right-handed alpha
Helix 190
AV1
H
178 190Right-handed alpha
Helix 191
AV2
H
195 211Right-handed alpha
Helix 192
AV3
H
215 221Right-handed alpha
Helix 193
AV4
H
221 236Right-handed alpha
Helix 194
AV5
H
237 245Right-handed alpha
Helix 195
AV6
I
2 13Right-handed alpha
Helix 196
AV7
I
17 33Right-handed alpha
Helix 197
AV8
I
35 63Right-handed alpha
Helix 198
AV9
I
64 81Right-handed alpha
Helix 199
AW1
I
85 99Right-handed alpha
Helix 200
AW2
I
103 122Right-handed alpha
Helix 201
AW3
I
135 150Right-handed alpha
Helix 202
AW4
I
160 172Right-handed alpha
Helix 203
AW5
I
178 190Right-handed alpha
Helix 204
AW6
I
195 212Right-handed alpha
Helix 205
AW7
I
215 221Right-handed alpha
Helix 206
AW8
I
221 236Right-handed alpha
Helix 207
AW9
I
236 247Right-handed alpha
Helix 208
AX1
I
257 268Right-handed alpha
Helix 209
AX2
I
271 278Right-handed alpha
Helix 210
AX3
I
279 293Right-handed alpha
Helix 211
AX4
I
300 304Right-handed 310
Helix 212
AX5
I
307 321Right-handed alpha
Helix 213
AX6
I
334 349Right-handed alpha
Helix 214
AX7
J
7 13Right-handed alpha
Helix 215
AX8
J
17 33Right-handed alpha
Helix 216
AX9
J
35 61Right-handed alpha
Helix 217
AY1
J
64 81Right-handed alpha
Helix 218
AY2
J
85 99Right-handed alpha
Helix 219
AY3
J
103 122Right-handed alpha
Helix 220
AY4
J
135 150Right-handed alpha
Helix 221
AY5
J
154 159Right-handed 310
Helix 222
AY6
J
160 172Right-handed alpha
Helix 223
AY7
J
178 190Right-handed alpha
Helix 224
AY8
J
195 212Right-handed alpha
Helix 225
AY9
J
215 221Right-handed alpha
Helix 226
AZ1
J
221 236Right-handed alpha
Helix 227
AZ2
J
236 247Right-handed alpha
Helix 228
AZ3
J
247 252Right-handed alpha
Helix 229
AZ4
J
257 268Right-handed alpha
Helix 230
AZ5
J
271 277Right-handed alpha
Helix 231
AZ6
J
279 293Right-handed alpha
Helix 232
AZ7
J
293 299Right-handed alpha
Helix 233
AZ8
J
300 304Right-handed 310
Helix 234
AZ9
J
306 322Right-handed alpha
Helix 235
BA1
J
334 348Right-handed alpha
Helix 236
BA2
J
350 364Right-handed alpha
Helix 237
BA3
J
367 378Right-handed alpha
Helix 238
BA4
J
378 383Right-handed alpha
Helix 239
BA5
J
384 386Right-handed 310
Helix 240
BA6
J
387 399Right-handed alpha
Helix 241
BA7
J
401 406Right-handed alpha
Helix 242
BA8
J
407 412Right-handed alpha
Helix 243
BA9
J
414 427Right-handed alpha
Helix 244
BB1
J
441 445Right-handed 310
Helix 245
BB2
K
7 13Right-handed alpha
Helix 246
BB3
K
17 34Right-handed alpha
Helix 247
BB4
K
35 61Right-handed alpha
Helix 248
BB5
K
64 81Right-handed alpha
Helix 249
BB6
K
85 99Right-handed alpha
Helix 250
BB7
K
103 122Right-handed alpha
Helix 251
BB8
K
135 148Right-handed alpha
Helix 252
BB9
K
158 172Right-handed alpha
Helix 253
BC1
K
178 190Right-handed alpha
Helix 254
BC2
K
191 194Right-handed 310
Helix 255
BC3
K
195 211Right-handed alpha
Helix 256
BC4
K
215 221Right-handed alpha
Helix 257
BC5
K
221 236Right-handed alpha
Helix 258
BC6
K
237 245Right-handed alpha
Helix 259
BC7
L
2 13Right-handed alpha
Helix 260
BC8
L
17 33Right-handed alpha
Helix 261
BC9
L
35 63Right-handed alpha
Helix 262
BD1
L
64 81Right-handed alpha
Helix 263
BD2
L
85 99Right-handed alpha
Helix 264
BD3
L
103 122Right-handed alpha
Helix 265
BD4
L
135 150Right-handed alpha
Helix 266
BD5
L
160 172Right-handed alpha
Helix 267
BD6
L
178 190Right-handed alpha
Helix 268
BD7
L
195 212Right-handed alpha
Helix 269
BD8
L
215 221Right-handed alpha
Helix 270
BD9
L
221 236Right-handed alpha
Helix 271
BE1
L
236 247Right-handed alpha
Helix 272
BE2
L
257 268Right-handed alpha
Helix 273
BE3
L
271 278Right-handed alpha
Helix 274
BE4
L
279 293Right-handed alpha
Helix 275
BE5
L
306 308Right-handed 310
Helix 276
BE6
L
309 321Right-handed alpha
Helix 277
BE7
L
334 349Right-handed alpha
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There are no sheets in PDB entry 9TRD
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