Analysis of interatomic Contacts of Structural Units in PDB entry:
9TU0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TU0 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 9TU0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28PRO 285
A
 LYS 287PRO 373
D
 GLY -2ILE 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9TU0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 95Right-handed alpha
Helix 2
AA2
A
129 136Right-handed alpha
Helix 3
AA3
A
139 160Right-handed alpha
Helix 4
AA4
A
168 170Right-handed 310
Helix 5
AA5
A
212 217Right-handed alpha
Helix 6
AA6
A
224 239Right-handed alpha
Helix 7
AA7
A
249 262Right-handed alpha
Helix 8
AA8
A
265 270Right-handed alpha
Helix 9
AA9
A
274 284Right-handed alpha
Helix 10
AB1
A
291 296Right-handed alpha
Helix 11
AB2
A
300 311Right-handed alpha
Helix 12
AB3
A
320 326Right-handed alpha
Helix 13
AB4
A
327 331Right-handed 310
Helix 14
AB5
A
335 339Right-handed 310
Helix 15
AB6
A
356 368Right-handed alpha
Helix 16
AB7
A
369 372Right-handed 310
Helix 17
AB8
D
-1 4Right-handed alpha
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There are 2 sheets in PDB entry 9TU0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 49first strand
Strand 2
A
56 61anti-parallel
Strand 3
A
66 73anti-parallel
Strand 4
A
118 123anti-parallel
Strand 5
A
105 107anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
172 174anti-parallel
Strand 3
A
180 182anti-parallel
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