Analysis of interatomic Contacts of Structural Units in PDB entry:
9TU8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TU8 entry

There are 5 chains in PDB entry 9TU8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	GLN 4	GLY 2104
y	GLN 4	GLY 2104
i	A 24	T 30
G	A 4	T 30
I	A 1	A 27

There are146 helices in PDB entry 9TU8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Y	8	28	Right-handed alpha
Helix 2	AA2	Y	31	43	Right-handed alpha
Helix 3	AA3	Y	70	75	Right-handed 310
Helix 4	AA4	Y	80	87	Right-handed alpha
Helix 5	AA5	Y	94	107	Right-handed alpha
Helix 6	AA6	Y	120	141	Right-handed alpha
Helix 7	AA7	Y	156	172	Right-handed alpha
Helix 8	AA8	Y	193	200	Right-handed alpha
Helix 9	AA9	Y	206	213	Right-handed alpha
Helix 10	AB1	Y	221	231	Right-handed alpha
Helix 11	AB2	Y	234	242	Right-handed alpha
Helix 12	AB3	Y	252	257	Right-handed 310
Helix 13	AB4	Y	258	276	Right-handed alpha
Helix 14	AB5	Y	298	314	Right-handed alpha
Helix 15	AB6	Y	333	337	Right-handed 310
Helix 16	AB7	Y	344	350	Right-handed alpha
Helix 17	AB8	Y	352	362	Right-handed alpha
Helix 18	AB9	Y	363	374	Right-handed alpha
Helix 19	AC1	Y	383	394	Right-handed alpha
Helix 20	AC2	Y	398	412	Right-handed alpha
Helix 21	AC3	Y	446	450	Right-handed 310
Helix 22	AC4	Y	516	523	Right-handed alpha
Helix 23	AC5	Y	606	620	Right-handed alpha
Helix 24	AC6	Y	629	633	Right-handed 310
Helix 25	AC7	Y	646	674	Right-handed alpha
Helix 26	AC8	Y	685	700	Right-handed alpha
Helix 27	AC9	Y	704	717	Right-handed alpha
Helix 28	AD1	Y	722	740	Right-handed alpha
Helix 29	AD2	Y	740	756	Right-handed alpha
Helix 30	AD3	Y	764	773	Right-handed alpha
Helix 31	AD4	Y	774	790	Right-handed alpha
Helix 32	AD5	Y	794	808	Right-handed alpha
Helix 33	AD6	Y	827	833	Right-handed alpha
Helix 34	AD7	Y	837	844	Right-handed alpha
Helix 35	AD8	Y	849	869	Right-handed alpha
Helix 36	AD9	Y	879	883	Right-handed 310
Helix 37	AE1	Y	910	914	Right-handed 310
Helix 38	AE2	Y	917	927	Right-handed alpha
Helix 39	AE3	Y	934	953	Right-handed alpha
Helix 40	AE4	Y	954	956	Right-handed 310
Helix 41	AE5	Y	966	970	Right-handed 310
Helix 42	AE6	Y	1021	1025	Right-handed 310
Helix 43	AE7	Y	1033	1044	Right-handed alpha
Helix 44	AE8	Y	1044	1054	Right-handed alpha
Helix 45	AE9	Y	1057	1065	Right-handed alpha
Helix 46	AF1	Y	1080	1093	Right-handed alpha
Helix 47	AF2	Y	1125	1134	Right-handed alpha
Helix 48	AF3	Y	1153	1161	Right-handed alpha
Helix 49	AF4	Y	1164	1169	Right-handed alpha
Helix 50	AF5	Y	1181	1200	Right-handed alpha
Helix 51	AF6	Y	1208	1213	Right-handed alpha
Helix 52	AF7	Y	1218	1230	Right-handed alpha
Helix 53	AF8	Y	1232	1242	Right-handed alpha
Helix 54	AF9	Y	1251	1288	Right-handed alpha
Helix 55	AG1	Y	1294	1310	Right-handed alpha
Helix 56	AG2	Y	1311	1319	Right-handed alpha
Helix 57	AG3	Y	1338	1348	Right-handed alpha
Helix 58	AG4	Y	1374	1381	Right-handed alpha
Helix 59	AG5	Y	1604	1624	Right-handed alpha
Helix 60	AG6	Y	1626	1630	Right-handed 310
Helix 61	AG7	Y	1661	1667	Right-handed alpha
Helix 62	AG8	Y	1668	1680	Right-handed alpha
Helix 63	AG9	Y	1695	1703	Right-handed 310
Helix 64	AH1	Y	1704	1712	Right-handed alpha
Helix 65	AH2	Y	1713	1721	Right-handed alpha
Helix 66	AH3	Y	1739	1750	Right-handed alpha
Helix 67	AH4	Y	1772	1785	Right-handed alpha
Helix 68	AH5	Y	1800	1812	Right-handed alpha
Helix 69	AH6	Y	1888	1892	Right-handed 310
Helix 70	AH7	Y	1914	1924	Right-handed alpha
Helix 71	AH8	Y	1927	1936	Right-handed alpha
Helix 72	AH9	Y	1952	1971	Right-handed alpha
Helix 73	AI1	Y	2000	2013	Right-handed alpha
Helix 74	AI2	Y	2057	2061	Right-handed 310
Helix 75	AI3	Y	2075	2085	Right-handed alpha
Helix 76	AI4	y	8	28	Right-handed alpha
Helix 77	AI5	y	31	43	Right-handed alpha
Helix 78	AI6	y	80	87	Right-handed alpha
Helix 79	AI7	y	94	103	Right-handed alpha
Helix 80	AI8	y	116	119	Right-handed 310
Helix 81	AI9	y	120	141	Right-handed alpha
Helix 82	AJ1	y	155	168	Right-handed alpha
Helix 83	AJ2	y	194	200	Right-handed alpha
Helix 84	AJ3	y	206	213	Right-handed alpha
Helix 85	AJ4	y	221	231	Right-handed alpha
Helix 86	AJ5	y	234	240	Right-handed alpha
Helix 87	AJ6	y	257	276	Right-handed alpha
Helix 88	AJ7	y	298	314	Right-handed alpha
Helix 89	AJ8	y	333	337	Right-handed 310
Helix 90	AJ9	y	345	352	Right-handed alpha
Helix 91	AK1	y	352	362	Right-handed alpha
Helix 92	AK2	y	363	375	Right-handed alpha
Helix 93	AK3	y	383	394	Right-handed alpha
Helix 94	AK4	y	398	412	Right-handed alpha
Helix 95	AK5	y	446	450	Right-handed 310
Helix 96	AK6	y	606	621	Right-handed alpha
Helix 97	AK7	y	627	632	Right-handed alpha
Helix 98	AK8	y	650	673	Right-handed alpha
Helix 99	AK9	y	685	700	Right-handed alpha
Helix 100	AL1	y	705	716	Right-handed alpha
Helix 101	AL2	y	722	740	Right-handed alpha
Helix 102	AL3	y	740	755	Right-handed alpha
Helix 103	AL4	y	764	772	Right-handed alpha
Helix 104	AL5	y	775	790	Right-handed alpha
Helix 105	AL6	y	794	808	Right-handed alpha
Helix 106	AL7	y	827	832	Right-handed 310
Helix 107	AL8	y	837	844	Right-handed alpha
Helix 108	AL9	y	849	866	Right-handed alpha
Helix 109	AM1	y	878	882	Right-handed 310
Helix 110	AM2	y	910	914	Right-handed 310
Helix 111	AM3	y	918	927	Right-handed alpha
Helix 112	AM4	y	934	953	Right-handed alpha
Helix 113	AM5	y	1021	1025	Right-handed 310
Helix 114	AM6	y	1033	1041	Right-handed alpha
Helix 115	AM7	y	1044	1054	Right-handed alpha
Helix 116	AM8	y	1057	1065	Right-handed alpha
Helix 117	AM9	y	1080	1093	Right-handed alpha
Helix 118	AN1	y	1125	1134	Right-handed alpha
Helix 119	AN2	y	1135	1137	Right-handed 310
Helix 120	AN3	y	1157	1162	Right-handed alpha
Helix 121	AN4	y	1164	1169	Right-handed alpha
Helix 122	AN5	y	1180	1200	Right-handed alpha
Helix 123	AN6	y	1218	1230	Right-handed alpha
Helix 124	AN7	y	1232	1242	Right-handed alpha
Helix 125	AN8	y	1251	1286	Right-handed alpha
Helix 126	AN9	y	1294	1308	Right-handed alpha
Helix 127	AO1	y	1311	1319	Right-handed alpha
Helix 128	AO2	y	1373	1381	Right-handed alpha
Helix 129	AO3	y	1445	1447	Right-handed 310
Helix 130	AO4	y	1547	1551	Right-handed 310
Helix 131	AO5	y	1604	1624	Right-handed alpha
Helix 132	AO6	y	1626	1628	Right-handed 310
Helix 133	AO7	y	1659	1666	Right-handed alpha
Helix 134	AO8	y	1668	1680	Right-handed alpha
Helix 135	AO9	y	1694	1698	Right-handed 310
Helix 136	AP1	y	1704	1710	Right-handed alpha
Helix 137	AP2	y	1713	1721	Right-handed alpha
Helix 138	AP3	y	1739	1750	Right-handed alpha
Helix 139	AP4	y	1772	1785	Right-handed alpha
Helix 140	AP5	y	1800	1811	Right-handed alpha
Helix 141	AP6	y	1888	1892	Right-handed 310
Helix 142	AP7	y	1914	1924	Right-handed alpha
Helix 143	AP8	y	1927	1936	Right-handed alpha
Helix 144	AP9	y	1952	1967	Right-handed alpha
Helix 145	AQ1	y	2000	2015	Right-handed alpha
Helix 146	AQ2	y	2075	2084	Right-handed alpha

There are 37 sheets in PDB entry 9TU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	380	382	first strand
Strand 2	Y	57	60	anti-parallel
Strand 3	Y	422	429	anti-parallel
Strand 4	Y	1143	1150	parallel
Strand 5	Y	1116	1119	parallel
Strand 6	Y	640	643	parallel
Strand 7	Y	1098	1101	parallel
Strand 8	Y	1072	1075	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	179	182	first strand
Strand 2	Y	217	220	parallel
Strand 3	Y	149	152	parallel
Strand 4	Y	247	250	parallel
Strand 5	Y	286	291	parallel
Strand 6	Y	110	114	parallel
Strand 7	Y	320	324	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	413	414	first strand
Strand 2	Y	417	418	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	459	460	first strand
Strand 2	Y	435	437	anti-parallel
Strand 3	Y	473	478	anti-parallel
Strand 4	Y	485	490	anti-parallel
Strand 5	Y	536	539	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	459	460	first strand
Strand 2	Y	435	437	anti-parallel
Strand 3	Y	473	478	anti-parallel
Strand 4	Y	601	602	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	544	549	first strand
Strand 2	Y	565	570	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	762	763	first strand
Strand 2	Y	972	974	anti-parallel
Strand 3	Y	824	826	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	957	958	first strand
Strand 2	Y	963	964	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	988	989	first strand
Strand 2	Y	978	981	anti-parallel
Strand 3	Y	1012	1015	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1371	1373	first strand
Strand 2	Y	1331	1335	anti-parallel
Strand 3	Y	1459	1461	parallel
Strand 4	Y	1398	1399	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1386	1389	first strand
Strand 2	Y	1392	1395	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1430	1432	first strand
Strand 2	Y	1419	1423	anti-parallel
Strand 3	Y	1449	1453	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1484	1486	first strand
Strand 2	Y	1501	1515	anti-parallel
Strand 3	Y	1493	1494	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1484	1486	first strand
Strand 2	Y	1501	1515	anti-parallel
Strand 3	Y	1581	1594	anti-parallel
Strand 4	Y	1647	1651	anti-parallel
Strand 5	Y	1631	1635	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1532	1533	first strand
Strand 2	Y	1523	1526	anti-parallel
Strand 3	Y	1575	1579	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1554	1555	first strand
Strand 2	Y	1570	1571	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1734	1735	first strand
Strand 2	Y	1871	1873	anti-parallel
Strand 3	Y	1845	1850	anti-parallel
Strand 4	Y	1833	1840	anti-parallel
Strand 5	Y	1829	1830	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1734	1735	first strand
Strand 2	Y	1871	1873	anti-parallel
Strand 3	Y	1845	1850	anti-parallel
Strand 4	Y	1833	1840	anti-parallel
Strand 5	Y	1755	1760	anti-parallel
Strand 6	Y	1788	1792	parallel
Strand 7	Y	1818	1822	parallel
Strand 8	Y	1885	1886	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1902	1903	first strand
Strand 2	Y	2100	2102	anti-parallel
Strand 3	Y	2053	2055	anti-parallel
Strand 4	Y	2040	2041	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1945	1946	first strand
Strand 2	Y	1977	1981	parallel
Strand 3	Y	2025	2029	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	380	382	first strand
Strand 2	y	57	60	anti-parallel
Strand 3	y	422	428	anti-parallel
Strand 4	y	1143	1149	parallel
Strand 5	y	1116	1119	parallel
Strand 6	y	640	643	parallel
Strand 7	y	1098	1101	parallel
Strand 8	y	1072	1075	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	179	182	first strand
Strand 2	y	217	220	parallel
Strand 3	y	149	152	parallel
Strand 4	y	247	250	parallel
Strand 5	y	286	291	parallel
Strand 6	y	111	114	parallel
Strand 7	y	322	323	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	459	460	first strand
Strand 2	y	435	437	anti-parallel
Strand 3	y	473	479	anti-parallel
Strand 4	y	485	493	anti-parallel
Strand 5	y	536	540	anti-parallel
Strand 6	y	565	571	anti-parallel
Strand 7	y	544	549	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	499	503	first strand
Strand 2	y	485	493	anti-parallel
Strand 3	y	473	479	anti-parallel
Strand 4	y	600	602	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	762	763	first strand
Strand 2	y	972	974	anti-parallel
Strand 3	y	824	826	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	891	892	first strand
Strand 2	y	905	906	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	957	958	first strand
Strand 2	y	963	964	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	988	989	first strand
Strand 2	y	978	981	anti-parallel
Strand 3	y	1012	1015	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1385	1389	first strand
Strand 2	y	1392	1396	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1398	1399	first strand
Strand 2	y	1460	1461	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1428	1432	first strand
Strand 2	y	1419	1423	anti-parallel
Strand 3	y	1449	1453	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1484	1486	first strand
Strand 2	y	1501	1515	anti-parallel
Strand 3	y	1493	1494	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1484	1486	first strand
Strand 2	y	1501	1515	anti-parallel
Strand 3	y	1581	1594	anti-parallel
Strand 4	y	1643	1652	anti-parallel
Strand 5	y	1630	1639	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1532	1534	first strand
Strand 2	y	1523	1526	anti-parallel
Strand 3	y	1575	1579	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1734	1735	first strand
Strand 2	y	1871	1875	anti-parallel
Strand 3	y	1845	1850	anti-parallel
Strand 4	y	1833	1840	anti-parallel
Strand 5	y	1755	1759	anti-parallel
Strand 6	y	1787	1792	parallel
Strand 7	y	1818	1822	parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1734	1735	first strand
Strand 2	y	1871	1875	anti-parallel
Strand 3	y	1845	1850	anti-parallel
Strand 4	y	1833	1840	anti-parallel
Strand 5	y	1829	1830	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1901	1904	first strand
Strand 2	y	2099	2102	anti-parallel
Strand 3	y	2053	2055	anti-parallel
Strand 4	y	2040	2042	anti-parallel
Strand 5	y	1944	1946	anti-parallel
Strand 6	y	1977	1980	parallel
Strand 7	y	2025	2028	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TU8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TU8