Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TUB entry

There are 5 chains in PDB entry 9TUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
i	T 1	C 5
y	GLN 4	GLY 2104
Y	GLN 4	ALA 1894
I	G 4	C 26
G	G 16	C 27

There are145 helices in PDB entry 9TUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	y	7	28	Right-handed alpha
Helix 2	AA2	y	31	43	Right-handed alpha
Helix 3	AA3	y	70	77	Right-handed alpha
Helix 4	AA4	y	80	87	Right-handed alpha
Helix 5	AA5	y	94	107	Right-handed alpha
Helix 6	AA6	y	120	141	Right-handed alpha
Helix 7	AA7	y	156	170	Right-handed alpha
Helix 8	AA8	y	194	200	Right-handed alpha
Helix 9	AA9	y	206	213	Right-handed alpha
Helix 10	AB1	y	221	231	Right-handed alpha
Helix 11	AB2	y	234	242	Right-handed alpha
Helix 12	AB3	y	258	276	Right-handed alpha
Helix 13	AB4	y	298	314	Right-handed alpha
Helix 14	AB5	y	333	337	Right-handed 310
Helix 15	AB6	y	344	351	Right-handed alpha
Helix 16	AB7	y	352	362	Right-handed alpha
Helix 17	AB8	y	363	374	Right-handed alpha
Helix 18	AB9	y	383	394	Right-handed alpha
Helix 19	AC1	y	398	412	Right-handed alpha
Helix 20	AC2	y	446	450	Right-handed 310
Helix 21	AC3	y	606	621	Right-handed alpha
Helix 22	AC4	y	629	633	Right-handed 310
Helix 23	AC5	y	647	673	Right-handed alpha
Helix 24	AC6	y	685	699	Right-handed alpha
Helix 25	AC7	y	705	716	Right-handed alpha
Helix 26	AC8	y	722	740	Right-handed alpha
Helix 27	AC9	y	740	755	Right-handed alpha
Helix 28	AD1	y	764	772	Right-handed alpha
Helix 29	AD2	y	774	789	Right-handed alpha
Helix 30	AD3	y	794	808	Right-handed alpha
Helix 31	AD4	y	816	821	Right-handed alpha
Helix 32	AD5	y	828	833	Right-handed alpha
Helix 33	AD6	y	837	844	Right-handed alpha
Helix 34	AD7	y	849	867	Right-handed alpha
Helix 35	AD8	y	878	883	Right-handed 310
Helix 36	AD9	y	910	914	Right-handed 310
Helix 37	AE1	y	918	927	Right-handed alpha
Helix 38	AE2	y	934	953	Right-handed alpha
Helix 39	AE3	y	954	956	Right-handed 310
Helix 40	AE4	y	992	996	Right-handed 310
Helix 41	AE5	y	1021	1025	Right-handed 310
Helix 42	AE6	y	1033	1044	Right-handed alpha
Helix 43	AE7	y	1044	1054	Right-handed alpha
Helix 44	AE8	y	1057	1065	Right-handed alpha
Helix 45	AE9	y	1080	1094	Right-handed alpha
Helix 46	AF1	y	1102	1107	Right-handed alpha
Helix 47	AF2	y	1125	1134	Right-handed alpha
Helix 48	AF3	y	1153	1162	Right-handed alpha
Helix 49	AF4	y	1164	1169	Right-handed alpha
Helix 50	AF5	y	1180	1201	Right-handed alpha
Helix 51	AF6	y	1218	1230	Right-handed alpha
Helix 52	AF7	y	1231	1242	Right-handed alpha
Helix 53	AF8	y	1251	1288	Right-handed alpha
Helix 54	AF9	y	1294	1309	Right-handed alpha
Helix 55	AG1	y	1311	1319	Right-handed alpha
Helix 56	AG2	y	1339	1343	Right-handed 310
Helix 57	AG3	y	1348	1354	Right-handed alpha
Helix 58	AG4	y	1374	1381	Right-handed alpha
Helix 59	AG5	y	1604	1624	Right-handed alpha
Helix 60	AG6	y	1626	1628	Right-handed 310
Helix 61	AG7	y	1661	1666	Right-handed 310
Helix 62	AG8	y	1667	1680	Right-handed alpha
Helix 63	AG9	y	1695	1700	Right-handed alpha
Helix 64	AH1	y	1701	1703	Right-handed 310
Helix 65	AH2	y	1704	1712	Right-handed alpha
Helix 66	AH3	y	1713	1721	Right-handed alpha
Helix 67	AH4	y	1723	1727	Right-handed 310
Helix 68	AH5	y	1739	1750	Right-handed alpha
Helix 69	AH6	y	1773	1784	Right-handed alpha
Helix 70	AH7	y	1795	1799	Right-handed 310
Helix 71	AH8	y	1800	1812	Right-handed alpha
Helix 72	AH9	y	1913	1927	Right-handed alpha
Helix 73	AI1	y	1927	1937	Right-handed alpha
Helix 74	AI2	y	1952	1970	Right-handed alpha
Helix 75	AI3	y	2000	2013	Right-handed alpha
Helix 76	AI4	y	2075	2086	Right-handed alpha
Helix 77	AI5	Y	8	28	Right-handed alpha
Helix 78	AI6	Y	31	43	Right-handed alpha
Helix 79	AI7	Y	70	75	Right-handed 310
Helix 80	AI8	Y	80	87	Right-handed alpha
Helix 81	AI9	Y	94	107	Right-handed alpha
Helix 82	AJ1	Y	120	141	Right-handed alpha
Helix 83	AJ2	Y	157	173	Right-handed alpha
Helix 84	AJ3	Y	190	192	Right-handed 310
Helix 85	AJ4	Y	193	200	Right-handed alpha
Helix 86	AJ5	Y	206	213	Right-handed alpha
Helix 87	AJ6	Y	221	231	Right-handed alpha
Helix 88	AJ7	Y	234	242	Right-handed alpha
Helix 89	AJ8	Y	253	256	Right-handed 310
Helix 90	AJ9	Y	258	276	Right-handed alpha
Helix 91	AK1	Y	298	314	Right-handed alpha
Helix 92	AK2	Y	333	337	Right-handed 310
Helix 93	AK3	Y	344	350	Right-handed alpha
Helix 94	AK4	Y	352	361	Right-handed alpha
Helix 95	AK5	Y	363	374	Right-handed alpha
Helix 96	AK6	Y	383	394	Right-handed alpha
Helix 97	AK7	Y	398	412	Right-handed alpha
Helix 98	AK8	Y	446	450	Right-handed 310
Helix 99	AK9	Y	606	621	Right-handed alpha
Helix 100	AL1	Y	627	632	Right-handed alpha
Helix 101	AL2	Y	646	674	Right-handed alpha
Helix 102	AL3	Y	685	700	Right-handed alpha
Helix 103	AL4	Y	704	717	Right-handed alpha
Helix 104	AL5	Y	722	740	Right-handed alpha
Helix 105	AL6	Y	740	754	Right-handed alpha
Helix 106	AL7	Y	764	773	Right-handed alpha
Helix 107	AL8	Y	775	790	Right-handed alpha
Helix 108	AL9	Y	794	808	Right-handed alpha
Helix 109	AM1	Y	837	844	Right-handed alpha
Helix 110	AM2	Y	849	868	Right-handed alpha
Helix 111	AM3	Y	878	883	Right-handed 310
Helix 112	AM4	Y	910	914	Right-handed 310
Helix 113	AM5	Y	917	927	Right-handed alpha
Helix 114	AM6	Y	934	953	Right-handed alpha
Helix 115	AM7	Y	1021	1025	Right-handed 310
Helix 116	AM8	Y	1033	1044	Right-handed alpha
Helix 117	AM9	Y	1044	1054	Right-handed alpha
Helix 118	AN1	Y	1057	1065	Right-handed alpha
Helix 119	AN2	Y	1080	1094	Right-handed alpha
Helix 120	AN3	Y	1125	1134	Right-handed alpha
Helix 121	AN4	Y	1153	1162	Right-handed alpha
Helix 122	AN5	Y	1164	1169	Right-handed alpha
Helix 123	AN6	Y	1180	1200	Right-handed alpha
Helix 124	AN7	Y	1208	1213	Right-handed alpha
Helix 125	AN8	Y	1218	1230	Right-handed alpha
Helix 126	AN9	Y	1231	1233	Right-handed 310
Helix 127	AO1	Y	1234	1242	Right-handed alpha
Helix 128	AO2	Y	1251	1288	Right-handed alpha
Helix 129	AO3	Y	1294	1310	Right-handed alpha
Helix 130	AO4	Y	1311	1319	Right-handed alpha
Helix 131	AO5	Y	1338	1354	Right-handed alpha
Helix 132	AO6	Y	1374	1381	Right-handed alpha
Helix 133	AO7	Y	1445	1447	Right-handed 310
Helix 134	AO8	Y	1604	1624	Right-handed alpha
Helix 135	AO9	Y	1626	1630	Right-handed 310
Helix 136	AP1	Y	1659	1667	Right-handed alpha
Helix 137	AP2	Y	1668	1680	Right-handed alpha
Helix 138	AP3	Y	1687	1692	Right-handed alpha
Helix 139	AP4	Y	1699	1703	Right-handed 310
Helix 140	AP5	Y	1704	1712	Right-handed alpha
Helix 141	AP6	Y	1713	1720	Right-handed alpha
Helix 142	AP7	Y	1725	1730	Right-handed alpha
Helix 143	AP8	Y	1739	1750	Right-handed alpha
Helix 144	AP9	Y	1772	1784	Right-handed alpha
Helix 145	AQ1	Y	1800	1812	Right-handed alpha

There are 37 sheets in PDB entry 9TUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	380	382	first strand
Strand 2	y	57	60	anti-parallel
Strand 3	y	422	429	anti-parallel
Strand 4	y	1143	1150	parallel
Strand 5	y	1116	1119	parallel
Strand 6	y	640	643	parallel
Strand 7	y	1098	1101	parallel
Strand 8	y	1072	1075	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	217	219	first strand
Strand 2	y	149	152	parallel
Strand 3	y	247	251	parallel
Strand 4	y	286	292	parallel
Strand 5	y	110	115	parallel
Strand 6	y	320	323	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	179	180	first strand
Strand 2	y	203	204	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	413	414	first strand
Strand 2	y	417	418	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	459	460	first strand
Strand 2	y	435	436	anti-parallel
Strand 3	y	474	479	anti-parallel
Strand 4	y	485	493	anti-parallel
Strand 5	y	536	540	anti-parallel
Strand 6	y	565	571	anti-parallel
Strand 7	y	544	549	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	499	503	first strand
Strand 2	y	485	493	anti-parallel
Strand 3	y	474	479	anti-parallel
Strand 4	y	600	601	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	575	576	first strand
Strand 2	y	581	582	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	762	763	first strand
Strand 2	y	972	974	anti-parallel
Strand 3	y	824	826	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	892	893	first strand
Strand 2	y	906	907	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	957	959	first strand
Strand 2	y	962	964	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	988	989	first strand
Strand 2	y	978	981	anti-parallel
Strand 3	y	1012	1015	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1371	1373	first strand
Strand 2	y	1331	1335	anti-parallel
Strand 3	y	1459	1461	parallel
Strand 4	y	1398	1399	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1385	1387	first strand
Strand 2	y	1394	1396	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1429	1432	first strand
Strand 2	y	1419	1423	anti-parallel
Strand 3	y	1449	1455	anti-parallel
Strand 4	y	1579	1594	parallel
Strand 5	y	1501	1515	anti-parallel
Strand 6	y	1493	1494	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1484	1486	first strand
Strand 2	y	1501	1515	anti-parallel
Strand 3	y	1579	1594	anti-parallel
Strand 4	y	1644	1652	anti-parallel
Strand 5	y	1630	1638	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1532	1534	first strand
Strand 2	y	1523	1526	anti-parallel
Strand 3	y	1575	1576	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1554	1555	first strand
Strand 2	y	1570	1571	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1734	1735	first strand
Strand 2	y	1871	1875	anti-parallel
Strand 3	y	1845	1850	anti-parallel
Strand 4	y	1833	1840	anti-parallel
Strand 5	y	1829	1830	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1734	1735	first strand
Strand 2	y	1871	1875	anti-parallel
Strand 3	y	1845	1850	anti-parallel
Strand 4	y	1833	1840	anti-parallel
Strand 5	y	1755	1760	anti-parallel
Strand 6	y	1789	1792	parallel
Strand 7	y	1819	1822	parallel
Strand 8	y	1884	1886	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1855	1856	first strand
Strand 2	y	1862	1864	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	1901	1902	first strand
Strand 2	y	2101	2102	anti-parallel
Strand 3	y	2051	2055	anti-parallel
Strand 4	y	2040	2045	anti-parallel
Strand 5	y	1940	1946	anti-parallel
Strand 6	y	1977	1980	parallel
Strand 7	y	2025	2028	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	y	2063	2064	first strand
Strand 2	y	2090	2091	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	380	382	first strand
Strand 2	Y	57	60	anti-parallel
Strand 3	Y	422	428	anti-parallel
Strand 4	Y	1143	1149	parallel
Strand 5	Y	1116	1119	parallel
Strand 6	Y	640	643	parallel
Strand 7	Y	1098	1101	parallel
Strand 8	Y	1072	1075	parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	203	204	first strand
Strand 2	Y	179	182	parallel
Strand 3	Y	217	220	parallel
Strand 4	Y	149	152	parallel
Strand 5	Y	247	251	parallel
Strand 6	Y	286	291	parallel
Strand 7	Y	110	114	parallel
Strand 8	Y	320	323	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	459	460	first strand
Strand 2	Y	435	437	anti-parallel
Strand 3	Y	473	479	anti-parallel
Strand 4	Y	485	493	anti-parallel
Strand 5	Y	536	539	anti-parallel
Strand 6	Y	570	571	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	499	502	first strand
Strand 2	Y	485	493	anti-parallel
Strand 3	Y	473	479	anti-parallel
Strand 4	Y	600	602	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	546	549	first strand
Strand 2	Y	565	568	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	761	763	first strand
Strand 2	Y	972	974	anti-parallel
Strand 3	Y	824	826	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	957	958	first strand
Strand 2	Y	963	964	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	988	989	first strand
Strand 2	Y	978	981	anti-parallel
Strand 3	Y	1012	1015	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1371	1373	first strand
Strand 2	Y	1331	1334	anti-parallel
Strand 3	Y	1459	1462	parallel
Strand 4	Y	1392	1399	anti-parallel
Strand 5	Y	1386	1389	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1429	1432	first strand
Strand 2	Y	1419	1423	anti-parallel
Strand 3	Y	1449	1453	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1484	1486	first strand
Strand 2	Y	1501	1515	anti-parallel
Strand 3	Y	1493	1494	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1484	1486	first strand
Strand 2	Y	1501	1515	anti-parallel
Strand 3	Y	1581	1594	anti-parallel
Strand 4	Y	1647	1651	anti-parallel
Strand 5	Y	1631	1635	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1532	1534	first strand
Strand 2	Y	1523	1526	anti-parallel
Strand 3	Y	1575	1576	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1554	1555	first strand
Strand 2	Y	1570	1571	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	1734	1735	first strand
Strand 2	Y	1871	1875	anti-parallel
Strand 3	Y	1845	1850	anti-parallel
Strand 4	Y	1834	1840	anti-parallel
Strand 5	Y	1755	1760	anti-parallel
Strand 6	Y	1787	1792	parallel
Strand 7	Y	1818	1822	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUB