Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TUF entry

There are 3 chains in PDB entry 9TUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 779HIS 876
C
 LEU 779HIS 876
B
 LEU 779SER 875
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9TUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
788 800Right-handed alpha
Helix 2
AA2
A
802 810Right-handed alpha
Helix 3
AA3
A
813 824Right-handed alpha
Helix 4
AA4
A
827 843Right-handed alpha
Helix 5
AA5
A
848 860Right-handed alpha
Helix 6
AA6
A
862 875Right-handed alpha
Helix 7
AA7
C
788 800Right-handed alpha
Helix 8
AA8
C
802 810Right-handed alpha
Helix 9
AA9
C
813 824Right-handed alpha
Helix 10
AB1
C
827 843Right-handed alpha
Helix 11
AB2
C
848 860Right-handed alpha
Helix 12
AB3
C
862 876Right-handed alpha
Helix 13
AB4
B
788 800Right-handed alpha
Helix 14
AB5
B
802 810Right-handed alpha
Helix 15
AB6
B
813 824Right-handed alpha
Helix 16
AB7
B
827 843Right-handed alpha
Helix 17
AB8
B
848 860Right-handed alpha
Helix 18
AB9
B
862 875Right-handed alpha
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There are 3 sheets in PDB entry 9TUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 781first strand
Strand 2
A
785 786anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
780 781first strand
Strand 2
C
785 786anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
780 781first strand
Strand 2
B
785 786anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il