Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TUW entry

There are 6 chains in PDB entry 9TUW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 781	CYS 853
B	GLN 21	GLU 233
C	ASP 21	ASN 230
D	CYS 781	CYS 853
E	GLN 21	ILE 232
F	ASP 21	ARG 231

There are 18 helices in PDB entry 9TUW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	816	822	Right-handed alpha
Helix 2	AA2	B	48	52	Right-handed 310
Helix 3	AA3	B	82	85	Right-handed 310
Helix 4	AA4	B	107	111	Right-handed 310
Helix 5	AA5	B	178	180	Right-handed 310
Helix 6	AA6	B	222	225	Right-handed 310
Helix 7	AA7	C	99	103	Right-handed 310
Helix 8	AA8	C	141	147	Right-handed alpha
Helix 9	AA9	C	203	208	Right-handed alpha
Helix 10	AB1	D	816	822	Right-handed alpha
Helix 11	AB2	E	48	52	Right-handed 310
Helix 12	AB3	E	82	85	Right-handed 310
Helix 13	AB4	E	107	111	Right-handed 310
Helix 14	AB5	E	178	180	Right-handed 310
Helix 15	AB6	E	222	225	Right-handed 310
Helix 16	AB7	F	99	103	Right-handed 310
Helix 17	AB8	F	141	148	Right-handed alpha
Helix 18	AB9	F	203	208	Right-handed alpha

There are 27 sheets in PDB entry 9TUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	786	787	first strand
Strand 2	A	800	801	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	807	first strand
Strand 2	A	813	815	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	828	832	first strand
Strand 2	A	837	841	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	38	45	anti-parallel
Strand 3	B	98	103	anti-parallel
Strand 4	B	88	93	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	129	133	parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	65	71	anti-parallel
Strand 6	B	78	80	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	129	133	parallel
Strand 3	B	112	118	anti-parallel
Strand 4	B	124	125	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	157	167	anti-parallel
Strand 3	B	196	206	anti-parallel
Strand 4	B	185	187	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	157	167	anti-parallel
Strand 3	B	196	206	anti-parallel
Strand 4	B	191	193	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	216	221	anti-parallel
Strand 3	B	226	231	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	39	45	anti-parallel
Strand 3	C	90	95	anti-parallel
Strand 4	C	82	87	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	122	126	parallel
Strand 3	C	105	110	anti-parallel
Strand 4	C	53	58	anti-parallel
Strand 5	C	65	69	anti-parallel
Strand 6	C	73	74	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	138	first strand
Strand 2	C	149	159	anti-parallel
Strand 3	C	193	202	anti-parallel
Strand 4	C	179	183	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	165	170	anti-parallel
Strand 3	C	212	217	anti-parallel
Strand 4	C	225	229	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	786	787	first strand
Strand 2	D	800	801	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	807	first strand
Strand 2	D	813	815	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	828	832	first strand
Strand 2	D	837	841	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	38	45	anti-parallel
Strand 3	E	98	103	anti-parallel
Strand 4	E	88	93	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	129	133	parallel
Strand 3	E	112	118	anti-parallel
Strand 4	E	54	59	anti-parallel
Strand 5	E	65	71	anti-parallel
Strand 6	E	78	80	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	32	first strand
Strand 2	E	129	133	parallel
Strand 3	E	112	118	anti-parallel
Strand 4	E	124	125	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	157	167	anti-parallel
Strand 3	E	196	206	anti-parallel
Strand 4	E	185	187	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	146	first strand
Strand 2	E	157	167	anti-parallel
Strand 3	E	196	206	anti-parallel
Strand 4	E	191	193	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	176	first strand
Strand 2	E	216	221	anti-parallel
Strand 3	E	226	231	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	25	first strand
Strand 2	F	39	45	anti-parallel
Strand 3	F	90	95	anti-parallel
Strand 4	F	82	87	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	33	first strand
Strand 2	F	122	126	parallel
Strand 3	F	105	110	anti-parallel
Strand 4	F	53	58	anti-parallel
Strand 5	F	65	69	anti-parallel
Strand 6	F	73	74	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	138	first strand
Strand 2	F	149	159	anti-parallel
Strand 3	F	193	202	anti-parallel
Strand 4	F	179	183	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	164	165	first strand
Strand 2	F	217	218	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	175	first strand
Strand 2	F	168	170	anti-parallel
Strand 3	F	211	214	anti-parallel
Strand 4	F	227	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TUW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUW