Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TUY entry

There are 4 chains in PDB entry 9TUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 32	LYS 287
B	LYS 719	ASN 816
C	GLN 32	LYS 287
D	LYS 719	ASN 816

There are 10 helices in PDB entry 9TUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	105	107	Right-handed 310
Helix 2	AA2	A	118	122	Right-handed 310
Helix 3	AA3	A	201	205	Right-handed 310
Helix 4	AA4	A	254	258	Right-handed 310
Helix 5	AA5	B	770	778	Right-handed 310
Helix 6	AA6	C	105	107	Right-handed 310
Helix 7	AA7	C	118	122	Right-handed 310
Helix 8	AA8	C	201	205	Right-handed 310
Helix 9	AA9	C	254	258	Right-handed 310
Helix 10	AB1	D	770	774	Right-handed 310

There are 22 sheets in PDB entry 9TUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	49	56	anti-parallel
Strand 3	A	109	114	anti-parallel
Strand 4	A	99	104	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	147	151	parallel
Strand 3	A	123	130	anti-parallel
Strand 4	A	65	72	anti-parallel
Strand 5	A	76	83	anti-parallel
Strand 6	A	89	91	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	A	147	151	parallel
Strand 3	A	123	130	anti-parallel
Strand 4	A	140	143	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	279	283	parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	209	213	anti-parallel
Strand 5	A	220	223	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	279	283	parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	273	275	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	245	250	anti-parallel
Strand 3	A	237	242	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	728	733	first strand
Strand 2	B	736	741	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	748	first strand
Strand 2	B	751	754	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	767	768	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	791	first strand
Strand 2	B	796	801	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	807	first strand
Strand 2	B	813	815	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	49	56	anti-parallel
Strand 3	C	109	114	anti-parallel
Strand 4	C	99	104	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	147	151	parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	65	72	anti-parallel
Strand 5	C	76	83	anti-parallel
Strand 6	C	89	91	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	C	147	151	parallel
Strand 3	C	123	130	anti-parallel
Strand 4	C	140	143	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	185	first strand
Strand 2	C	279	283	parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	209	213	anti-parallel
Strand 5	C	220	223	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	185	first strand
Strand 2	C	279	283	parallel
Strand 3	C	260	266	anti-parallel
Strand 4	C	273	275	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	245	250	anti-parallel
Strand 3	C	237	242	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	728	733	first strand
Strand 2	D	736	741	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	745	748	first strand
Strand 2	D	751	754	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	758	759	first strand
Strand 2	D	767	768	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	786	791	first strand
Strand 2	D	796	801	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	807	first strand
Strand 2	D	813	815	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TUY