Analysis of interatomic Contacts of Structural Units in PDB entry:
9TVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TVK entry

There is 1 chain in PDB entry 9TVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 98ALA 480
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9TVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 102Right-handed 310
Helix 2
AA2
A
103 115Right-handed alpha
Helix 3
AA3
A
128 134Right-handed alpha
Helix 4
AA4
A
141 154Right-handed alpha
Helix 5
AA5
A
156 159Right-handed 310
Helix 6
AA6
A
196 207Right-handed alpha
Helix 7
AA7
A
223 239Right-handed alpha
Helix 8
AA8
A
240 255Right-handed alpha
Helix 9
AA9
A
287 290Right-handed 310
Helix 10
AB1
A
293 314Right-handed alpha
Helix 11
AB2
A
323 325Right-handed 310
Helix 12
AB3
A
348 364Right-handed alpha
Helix 13
AB4
A
366 377Right-handed alpha
Helix 14
AB5
A
385 400Right-handed alpha
Helix 15
AB6
A
400 405Right-handed alpha
Helix 16
AB7
A
411 415Right-handed alpha
Helix 17
AB8
A
415 422Right-handed alpha
Helix 18
AB9
A
423 431Right-handed alpha
Helix 19
AC1
A
438 456Right-handed alpha
Helix 20
AC2
A
462 480Right-handed alpha
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There are 5 sheets in PDB entry 9TVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
170 171anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 164first strand
Strand 2
A
175 182anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
275 279anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
335 338parallel
Strand 3
A
327 330anti-parallel
Strand 4
A
284 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
344 346anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
409 410first strand
Strand 2
A
459 460anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il