Analysis of interatomic Contacts of Structural Units in PDB entry:
9TVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TVN entry

There is 1 chain in PDB entry 9TVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 102GLU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9TVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 111Right-handed alpha
Helix 2
AA2
A
113 125Right-handed alpha
Helix 3
AA3
A
126 129Right-handed 310
Helix 4
AA4
A
133 146Right-handed alpha
Helix 5
AA5
A
151 164Right-handed alpha
Helix 6
AA6
A
166 169Right-handed 310
Helix 7
AA7
A
206 209Right-handed 310
Helix 8
AA8
A
210 225Right-handed alpha
Helix 9
AA9
A
235 250Right-handed alpha
Helix 10
AB1
A
250 265Right-handed alpha
Helix 11
AB2
A
277 281Right-handed 310
Helix 12
AB3
A
297 299Right-handed 310
Helix 13
AB4
A
303 324Right-handed alpha
Helix 14
AB5
A
333 335Right-handed 310
Helix 15
AB6
A
358 374Right-handed alpha
Helix 16
AB7
A
376 387Right-handed alpha
Helix 17
AB8
A
395 414Right-handed alpha
Helix 18
AB9
A
423 432Right-handed alpha
Helix 19
AC1
A
433 438Right-handed 310
Helix 20
AC2
A
446 466Right-handed alpha
Helix 21
AC3
A
472 488Right-handed alpha
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There are 5 sheets in PDB entry 9TVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
185 192anti-parallel
Strand 3
A
180 181anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 174first strand
Strand 2
A
185 192anti-parallel
Strand 3
A
197 203anti-parallel
Strand 4
A
285 289anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 272first strand
Strand 2
A
345 348parallel
Strand 3
A
337 340anti-parallel
Strand 4
A
294 295anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 329first strand
Strand 2
A
354 356anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 420first strand
Strand 2
A
469 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il