Analysis of interatomic Contacts of Structural Units in PDB entry:
9TVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TVT entry

There are 10 chains in PDB entry 9TVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 334	GLY 526
B	ASN 334	PRO 527
C	GLU 1	PRO 215
D	ASP 1	GLU 213
E	GLU 1	LYS 226
F	SER 2	THR 213
H	GLU 1	PRO 215
I	GLU 1	SER 227
J	SER 2	THR 213
L	ASP 1	GLU 213

There are 52 helices in PDB entry 9TVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	338	343	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	365	370	Right-handed alpha
Helix 4	AA4	A	405	410	Right-handed 310
Helix 5	AA5	A	416	422	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	502	505	Right-handed 310
Helix 8	AA8	B	338	343	Right-handed alpha
Helix 9	AA9	B	349	353	Right-handed 310
Helix 10	AB1	B	365	370	Right-handed alpha
Helix 11	AB2	B	384	388	Right-handed 310
Helix 12	AB3	B	405	410	Right-handed 310
Helix 13	AB4	B	416	422	Right-handed alpha
Helix 14	AB5	B	502	505	Right-handed 310
Helix 15	AB6	C	28	32	Right-handed 310
Helix 16	AB7	C	61	64	Right-handed 310
Helix 17	AB8	C	86	90	Right-handed 310
Helix 18	AB9	C	158	160	Right-handed 310
Helix 19	AC1	C	189	194	Right-handed alpha
Helix 20	AC2	C	203	206	Right-handed 310
Helix 21	AC3	D	79	83	Right-handed 310
Helix 22	AC4	D	121	126	Right-handed alpha
Helix 23	AC5	D	183	188	Right-handed alpha
Helix 24	AC6	E	28	32	Right-handed 310
Helix 25	AC7	E	74	76	Right-handed 310
Helix 26	AC8	E	87	91	Right-handed 310
Helix 27	AC9	E	104	108	Right-handed 310
Helix 28	AD1	E	168	170	Right-handed 310
Helix 29	AD2	E	199	202	Right-handed 310
Helix 30	AD3	E	213	216	Right-handed 310
Helix 31	AD4	F	80	84	Right-handed 310
Helix 32	AD5	F	125	130	Right-handed alpha
Helix 33	AD6	F	185	190	Right-handed alpha
Helix 34	AD7	H	28	32	Right-handed 310
Helix 35	AD8	H	61	64	Right-handed 310
Helix 36	AD9	H	86	90	Right-handed 310
Helix 37	AE1	H	158	160	Right-handed 310
Helix 38	AE2	H	189	191	Right-handed 310
Helix 39	AE3	H	203	206	Right-handed 310
Helix 40	AE4	I	28	32	Right-handed 310
Helix 41	AE5	I	74	76	Right-handed 310
Helix 42	AE6	I	87	91	Right-handed 310
Helix 43	AE7	I	104	108	Right-handed 310
Helix 44	AE8	I	168	170	Right-handed 310
Helix 45	AE9	I	198	202	Right-handed 310
Helix 46	AF1	I	213	216	Right-handed 310
Helix 47	AF2	J	80	84	Right-handed 310
Helix 48	AF3	J	125	130	Right-handed alpha
Helix 49	AF4	J	185	192	Right-handed alpha
Helix 50	AF5	L	79	83	Right-handed 310
Helix 51	AF6	L	121	126	Right-handed alpha
Helix 52	AF7	L	183	188	Right-handed alpha

There are 56 sheets in PDB entry 9TVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	507	516	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	403	anti-parallel
Strand 3	B	523	525	anti-parallel
Strand 4	B	361	362	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	391	403	anti-parallel
Strand 3	B	507	517	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	109	113	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	109	113	parallel
Strand 3	C	91	97	anti-parallel
Strand 4	C	104	105	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	165	167	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	126	first strand
Strand 2	C	137	147	anti-parallel
Strand 3	C	178	187	anti-parallel
Strand 4	C	171	172	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	197	202	anti-parallel
Strand 3	C	207	212	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	102	107	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	163	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	69	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	119	123	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	57	60	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	109	110	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	175	177	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	136	first strand
Strand 2	E	147	157	anti-parallel
Strand 3	E	188	197	anti-parallel
Strand 4	E	181	182	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	166	first strand
Strand 2	E	207	212	anti-parallel
Strand 3	E	217	222	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	85	93	anti-parallel
Strand 4	F	35	39	anti-parallel
Strand 5	F	46	49	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	12	first strand
Strand 2	F	105	109	parallel
Strand 3	F	85	93	anti-parallel
Strand 4	F	98	101	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	71	76	anti-parallel
Strand 3	F	63	68	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	163	165	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	134	143	anti-parallel
Strand 3	F	176	184	anti-parallel
Strand 4	F	169	170	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	149	154	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	204	206	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	157	158	first strand
Strand 2	F	149	154	anti-parallel
Strand 3	F	195	201	anti-parallel
Strand 4	F	209	210	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	97	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	91	97	anti-parallel
Strand 4	H	104	105	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	178	187	anti-parallel
Strand 4	H	165	167	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	178	187	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	156	first strand
Strand 2	H	197	202	anti-parallel
Strand 3	H	207	212	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	69	73	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	119	123	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	51	anti-parallel
Strand 6	I	58	60	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	102	first strand
Strand 2	I	109	110	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	136	first strand
Strand 2	I	148	157	anti-parallel
Strand 3	I	188	196	anti-parallel
Strand 4	I	175	177	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	132	136	first strand
Strand 2	I	148	157	anti-parallel
Strand 3	I	188	196	anti-parallel
Strand 4	I	181	182	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	166	first strand
Strand 2	I	207	212	anti-parallel
Strand 3	I	217	222	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	105	109	parallel
Strand 3	J	85	93	anti-parallel
Strand 4	J	35	39	anti-parallel
Strand 5	J	46	49	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	105	109	parallel
Strand 3	J	85	93	anti-parallel
Strand 4	J	98	101	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	23	first strand
Strand 2	J	71	76	anti-parallel
Strand 3	J	63	68	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	122	first strand
Strand 2	J	134	143	anti-parallel
Strand 3	J	176	184	anti-parallel
Strand 4	J	163	165	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	122	first strand
Strand 2	J	134	143	anti-parallel
Strand 3	J	176	184	anti-parallel
Strand 4	J	169	170	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	158	first strand
Strand 2	J	149	154	anti-parallel
Strand 3	J	195	201	anti-parallel
Strand 4	J	204	206	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	157	158	first strand
Strand 2	J	149	154	anti-parallel
Strand 3	J	195	201	anti-parallel
Strand 4	J	209	210	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TVT