Analysis of interatomic Contacts of Structural Units in PDB entry:
9TYI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TYI entry

There are 2 chains in PDB entry 9TYI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 11SER 360
A
 LEU 3THR 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9TYI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
63 77Right-handed alpha
Helix 2
AA2
B
94 98Right-handed 310
Helix 3
AA3
B
112 119Right-handed alpha
Helix 4
AA4
B
122 143Right-handed alpha
Helix 5
AA5
B
151 153Right-handed 310
Helix 6
AA6
B
196 201Right-handed alpha
Helix 7
AA7
B
207 224Right-handed alpha
Helix 8
AA8
B
232 244Right-handed alpha
Helix 9
AA9
B
248 254Right-handed alpha
Helix 10
AB1
B
257 267Right-handed alpha
Helix 11
AB2
B
274 279Right-handed alpha
Helix 12
AB3
B
283 294Right-handed alpha
Helix 13
AB4
B
303 309Right-handed alpha
Helix 14
AB5
B
310 314Right-handed 310
Helix 15
AB6
B
318 322Right-handed 310
Helix 16
AB7
B
339 351Right-handed alpha
Helix 17
AB8
B
352 355Right-handed 310
Helix 18
AB9
A
4 8Right-handed 310
Helix 19
AC1
A
112 127Right-handed alpha
Helix 20
AC2
A
156 165Right-handed alpha
Helix 21
AC3
A
168 190Right-handed alpha
Helix 22
AC4
A
198 200Right-handed 310
Helix 23
AC5
A
237 242Right-handed alpha
Helix 24
AC6
A
248 265Right-handed alpha
Helix 25
AC7
A
315 326Right-handed alpha
Helix 26
AC8
A
337 348Right-handed alpha
Helix 27
AC9
A
357 362Right-handed alpha
Helix 28
AD1
A
364 373Right-handed alpha
Helix 29
AD2
A
376 386Right-handed alpha
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There are 6 sheets in PDB entry 9TYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
17 19anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 34first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
101 105anti-parallel
Strand 5
B
86 91anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
163 165anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
145 146first strand
Strand 2
B
172 173anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
99 106anti-parallel
Strand 3
A
144 149anti-parallel
Strand 4
A
135 141anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 204first strand
Strand 2
A
210 212anti-parallel
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