Analysis of interatomic Contacts of Structural Units in PDB entry:
9TYW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9TYW entry

There is 1 chain in PDB entry 9TYW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16SER 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 9TYW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 57Right-handed alpha
Helix 2
AA2
A
60 68Right-handed alpha
Helix 3
AA3
A
126 129Right-handed 310
Helix 4
AA4
A
150 159Right-handed alpha
Helix 5
AA5
A
211 222Right-handed alpha
Helix 6
AA6
A
263 274Right-handed alpha
Helix 7
AA7
A
284 295Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9TYW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 27first strand
Strand 2
A
116 121anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
97 101anti-parallel
Strand 5
A
227 231parallel
Strand 6
A
135 143anti-parallel
Strand 7
A
179 183anti-parallel
Strand 8
A
189 191anti-parallel
Strand 9
A
208 209parallel
Strand 10
A
123 124anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
87 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
81 84anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
300 303anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il