Analysis of interatomic Contacts of Structural Units in PDB entry:
9TZ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9TZ5 entry

There are 39 chains in PDB entry 9TZ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Z	PRO 2	ASN 17
0	VAL 3	LYS 70
1	ALA 2	ASP 106
2	ASP 2	PHE 117
3	MET 1	GLY 38
b	U 1	U 117
c	ASN 2	LYS 114
d	SER 2	LYS 212
e	PRO 2	GLY 119
f	MET 1	ARG 182
g	VAL 2	ALA 175
h	MET 1	GLY 104
i	ALA 2	LEU 142
j	MET 1	SER 110
k	MET 1	GLU 143
m	MET 1	GLU 119
o	ALA 2	LYS 275
q	MET 1	ALA 45
r	ASN 2	ASN 64
s	MET 1	MET 137
t	LYS 5	ASP 60
u	GLU 4	VAL 194
v	ALA 2	THR 55
w	MET 1	SER 205
x	MET 1	LEU 122
y	MET 1	VAL 44
z	PRO 2	ARG 63
a	G 1	G 960
a	G 962	G 1926
a	A 1928	A 1932
a	A 1934	G 2266
a	G 2268	G 2518
a	G 2521	C 2567
a	G 2569	C 2595
a	G 2597	U 2620
a	C 2622	C 2925
8	THR 10	GLU 86
7	ASN 2	ALA 92
9	ALA 2	SER 78

There are 98 helices in PDB entry 9TZ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Z	8	14	Right-handed 310
Helix 2	AA2	1	50	54	Right-handed 310
Helix 3	AA3	2	3	22	Right-handed alpha
Helix 4	AA4	2	55	62	Right-handed alpha
Helix 5	AA5	2	67	86	Right-handed alpha
Helix 6	AA6	2	100	114	Right-handed alpha
Helix 7	AA7	3	29	32	Right-handed 310
Helix 8	AA8	c	3	14	Right-handed alpha
Helix 9	AA9	c	54	57	Right-handed 310
Helix 10	AB1	c	98	103	Right-handed 310
Helix 11	AB2	c	105	110	Right-handed 310
Helix 12	AB3	d	57	61	Right-handed 310
Helix 13	AB4	d	62	73	Right-handed alpha
Helix 14	AB5	d	100	104	Right-handed 310
Helix 15	AB6	d	123	129	Right-handed alpha
Helix 16	AB7	e	6	21	Right-handed alpha
Helix 17	AB8	e	25	30	Right-handed 310
Helix 18	AB9	e	31	71	Right-handed alpha
Helix 19	AC1	e	75	87	Right-handed alpha
Helix 20	AC2	e	91	102	Right-handed alpha
Helix 21	AC3	e	102	118	Right-handed alpha
Helix 22	AC4	f	2	11	Right-handed alpha
Helix 23	AC5	f	11	21	Right-handed alpha
Helix 24	AC6	f	24	28	Right-handed 310
Helix 25	AC7	f	41	45	Right-handed 310
Helix 26	AC8	f	48	62	Right-handed alpha
Helix 27	AC9	f	92	106	Right-handed alpha
Helix 28	AD1	f	134	138	Right-handed 310
Helix 29	AD2	f	162	174	Right-handed alpha
Helix 30	AD3	g	3	8	Right-handed alpha
Helix 31	AD4	g	61	82	Right-handed alpha
Helix 32	AD5	g	138	151	Right-handed alpha
Helix 33	AD6	i	24	38	Right-handed alpha
Helix 34	AD7	i	58	62	Right-handed 310
Helix 35	AD8	i	67	72	Right-handed alpha
Helix 36	AD9	i	89	96	Right-handed alpha
Helix 37	AE1	i	96	107	Right-handed alpha
Helix 38	AE2	i	112	120	Right-handed alpha
Helix 39	AE3	i	132	136	Right-handed 310
Helix 40	AE4	j	13	25	Right-handed alpha
Helix 41	AE5	j	28	39	Right-handed alpha
Helix 42	AE6	j	41	62	Right-handed alpha
Helix 43	AE7	j	89	91	Right-handed 310
Helix 44	AE8	k	37	41	Right-handed 310
Helix 45	AE9	k	56	61	Right-handed alpha
Helix 46	AF1	k	69	72	Right-handed 310
Helix 47	AF2	k	80	85	Right-handed 310
Helix 48	AF3	k	91	98	Right-handed alpha
Helix 49	AF4	k	128	139	Right-handed alpha
Helix 50	AF5	m	13	31	Right-handed alpha
Helix 51	AF6	m	38	56	Right-handed alpha
Helix 52	AF7	m	59	71	Right-handed alpha
Helix 53	AF8	m	72	82	Right-handed alpha
Helix 54	AF9	m	82	87	Right-handed alpha
Helix 55	AG1	o	10	14	Right-handed 310
Helix 56	AG2	o	30	32	Right-handed 310
Helix 57	AG3	o	133	135	Right-handed 310
Helix 58	AG4	o	199	203	Right-handed 310
Helix 59	AG5	o	207	214	Right-handed alpha
Helix 60	AG6	o	221	225	Right-handed 310
Helix 61	AG7	o	264	266	Right-handed 310
Helix 62	AG8	q	22	29	Right-handed alpha
Helix 63	AG9	q	40	45	Right-handed alpha
Helix 64	AH1	r	3	8	Right-handed alpha
Helix 65	AH2	r	10	34	Right-handed alpha
Helix 66	AH3	r	40	64	Right-handed alpha
Helix 67	AH4	s	44	59	Right-handed alpha
Helix 68	AH5	s	110	123	Right-handed alpha
Helix 69	AH6	t	21	28	Right-handed alpha
Helix 70	AH7	t	43	53	Right-handed alpha
Helix 71	AH8	u	17	27	Right-handed alpha
Helix 72	AH9	u	49	56	Right-handed alpha
Helix 73	AI1	u	58	64	Right-handed 310
Helix 74	AI2	u	119	125	Right-handed alpha
Helix 75	AI3	u	141	144	Right-handed 310
Helix 76	AI4	u	164	166	Right-handed 310
Helix 77	AI5	v	9	17	Right-handed alpha
Helix 78	AI6	v	18	20	Right-handed 310
Helix 79	AI7	w	19	24	Right-handed alpha
Helix 80	AI8	w	28	42	Right-handed alpha
Helix 81	AI9	w	101	119	Right-handed alpha
Helix 82	AJ1	w	134	144	Right-handed alpha
Helix 83	AJ2	w	158	166	Right-handed alpha
Helix 84	AJ3	w	180	187	Right-handed alpha
Helix 85	AJ4	w	194	205	Right-handed alpha
Helix 86	AJ5	x	105	107	Right-handed 310
Helix 87	AJ6	x	111	118	Right-handed alpha
Helix 88	AJ7	y	8	17	Right-handed alpha
Helix 89	AJ8	y	17	23	Right-handed alpha
Helix 90	AJ9	y	24	38	Right-handed alpha
Helix 91	AK1	z	7	12	Right-handed alpha
Helix 92	AK2	z	37	46	Right-handed alpha
Helix 93	AK3	z	51	53	Right-handed 310
Helix 94	AK4	z	54	63	Right-handed alpha
Helix 95	AK5	7	3	7	Right-handed alpha
Helix 96	AK6	7	35	48	Right-handed alpha
Helix 97	AK7	9	53	63	Right-handed alpha
Helix 98	AK8	9	63	78	Right-handed alpha

There are 50 sheets in PDB entry 9TZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Initial residue	Terminal residue	Strand sense
Strand 1	26	32	first strand
Strand 2	6	13	anti-parallel
Strand 3	57	66	anti-parallel
Strand 4	41	50	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	66	67	first strand
Strand 2	1	34	37	anti-parallel
Strand 3	1	23	30	anti-parallel
Strand 4	1	11	14	anti-parallel
Strand 5	1	71	75	anti-parallel
Strand 6	1	80	82	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	42	47	first strand
Strand 2	1	58	63	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	84	88	first strand
Strand 2	1	94	98	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	47	52	first strand
Strand 2	2	35	40	anti-parallel
Strand 3	2	24	30	anti-parallel
Strand 4	2	90	93	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	2	4	first strand
Strand 2	3	34	36	parallel
Strand 3	3	22	26	anti-parallel
Strand 4	3	15	19	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	82	89	first strand
Strand 2	c	26	35	anti-parallel
Strand 3	c	38	52	anti-parallel
Strand 4	c	59	66	anti-parallel
Strand 5	c	69	76	anti-parallel
Strand 6	x	76	79	anti-parallel
Strand 7	x	69	70	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	91	92	first strand
Strand 2	c	112	113	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	4	16	first strand
Strand 2	d	22	30	anti-parallel
Strand 3	d	189	193	anti-parallel
Strand 4	d	172	184	anti-parallel
Strand 5	d	109	115	anti-parallel
Strand 6	d	203	208	anti-parallel
Strand 7	d	4	16	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	79	84	first strand
Strand 2	d	48	53	anti-parallel
Strand 3	d	33	39	anti-parallel
Strand 4	d	98	99	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	120	122	first strand
Strand 2	d	166	168	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	66	69	first strand
Strand 2	f	84	91	anti-parallel
Strand 3	f	31	39	anti-parallel
Strand 4	f	152	158	anti-parallel
Strand 5	f	128	132	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	10	11	first strand
Strand 2	g	50	55	anti-parallel
Strand 3	g	42	46	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	17	21	first strand
Strand 2	g	24	28	anti-parallel
Strand 3	g	33	37	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	122	125	first strand
Strand 2	g	131	136	anti-parallel
Strand 3	g	84	91	anti-parallel
Strand 4	g	162	165	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	96	100	first strand
Strand 2	g	103	107	anti-parallel
Strand 3	g	114	117	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	10	15	first strand
Strand 2	h	2	7	anti-parallel
Strand 3	h	38	43	anti-parallel
Strand 4	h	46	49	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	19	23	first strand
Strand 2	h	92	102	anti-parallel
Strand 3	h	58	68	anti-parallel
Strand 4	h	32	35	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	72	78	first strand
Strand 2	h	83	89	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	122	124	first strand
Strand 2	i	53	57	parallel
Strand 3	i	15	19	parallel
Strand 4	i	138	140	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	73	77	first strand
Strand 2	i	84	88	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	2	10	first strand
Strand 2	j	101	109	anti-parallel
Strand 3	j	69	78	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	82	87	first strand
Strand 2	j	93	98	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	74	78	first strand
Strand 2	k	107	111	parallel
Strand 3	k	126	127	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	89	90	first strand
Strand 2	k	121	123	parallel
Strand 3	k	141	143	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	33	37	first strand
Strand 2	m	109	115	anti-parallel
Strand 3	m	95	102	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	3	5	first strand
Strand 2	o	17	19	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	34	37	first strand
Strand 2	o	60	63	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	101	105	first strand
Strand 2	o	91	95	anti-parallel
Strand 3	o	76	82	anti-parallel
Strand 4	o	115	116	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	129	131	first strand
Strand 2	o	189	192	anti-parallel
Strand 3	o	140	142	anti-parallel
Strand 4	o	162	168	anti-parallel
Strand 5	o	171	175	anti-parallel
Strand 6	o	181	185	anti-parallel
Strand 7	o	268	270	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	144	145	first strand
Strand 2	o	152	154	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	18	20	first strand
Strand 2	q	2	5	anti-parallel
Strand 3	q	36	38	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	63	66	first strand
Strand 2	s	102	107	anti-parallel
Strand 3	s	32	36	anti-parallel
Strand 4	s	129	133	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	40	43	first strand
Strand 2	s	89	97	anti-parallel
Strand 3	s	72	76	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	t	37	41	first strand
Strand 2	t	6	11	anti-parallel
Strand 3	t	57	60	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	7	12	first strand
Strand 2	u	40	48	anti-parallel
Strand 3	u	30	37	anti-parallel
Strand 4	u	91	98	parallel
Strand 5	u	73	84	anti-parallel
Strand 6	u	66	70	anti-parallel
Strand 7	u	7	12	parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	148	151	first strand
Strand 2	u	105	114	parallel
Strand 3	u	134	139	anti-parallel
Strand 4	u	172	174	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	127	129	first strand
Strand 2	u	185	190	anti-parallel
Strand 3	u	159	162	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	27	29	first strand
Strand 2	v	36	38	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	47	48	first strand
Strand 2	v	51	52	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	w	14	17	first strand
Strand 2	w	2	6	anti-parallel
Strand 3	w	122	125	parallel
Strand 4	w	189	193	parallel
Strand 5	w	150	154	parallel
Strand 6	w	171	175	parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	7	10	first strand
Strand 2	x	16	24	anti-parallel
Strand 3	x	38	46	anti-parallel
Strand 4	x	57	64	anti-parallel
Strand 5	x	83	87	anti-parallel
Strand 6	x	7	10	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	x	102	103	first strand
Strand 2	x	121	122	parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	z	15	16	first strand
Strand 2	z	22	24	anti-parallel
Strand 3	z	48	49	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	22	23	first strand
Strand 2	8	36	39	anti-parallel
Strand 3	8	59	61	anti-parallel
Strand 4	8	51	53	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	8	30	31	first strand
Strand 2	8	65	72	anti-parallel
Strand 3	8	77	84	anti-parallel
Strand 4	8	45	47	parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	10	13	first strand
Strand 2	7	25	30	anti-parallel
Strand 3	7	76	83	anti-parallel
Strand 4	7	51	59	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	63	66	first strand
Strand 2	7	69	72	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	13	18	first strand
Strand 2	9	24	29	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	9	33	40	first strand
Strand 2	9	45	52	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9TZ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9TZ5