Analysis of interatomic Contacts of Structural Units in PDB entry:
9U04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U04 entry

There are 5 chains in PDB entry 9U04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 22	TYR 302
B	GLY 2	GLN 341
C	GLY 1	ALA 235
H	GLU 1	ALA 120
L	GLN 1	GLY 111

There are 26 helices in PDB entry 9U04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	56	60	Right-handed 310
Helix 3	AA3	A	72	75	Right-handed 310
Helix 4	AA4	A	76	82	Right-handed alpha
Helix 5	AA5	A	116	123	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed 310
Helix 7	AA7	A	221	226	Right-handed alpha
Helix 8	AA8	A	232	236	Right-handed 310
Helix 9	AA9	B	35	39	Right-handed 310
Helix 10	AB1	B	65	69	Right-handed 310
Helix 11	AB2	B	104	106	Right-handed 310
Helix 12	AB3	B	112	116	Right-handed 310
Helix 13	AB4	B	125	129	Right-handed 310
Helix 14	AB5	B	152	156	Right-handed 310
Helix 15	AB6	B	158	167	Right-handed alpha
Helix 16	AB7	B	213	218	Right-handed alpha
Helix 17	AB8	B	219	223	Right-handed 310
Helix 18	AB9	B	246	250	Right-handed 310
Helix 19	AC1	B	255	262	Right-handed 310
Helix 20	AC2	C	42	48	Right-handed alpha
Helix 21	AC3	C	64	69	Right-handed 310
Helix 22	AC4	C	98	105	Right-handed alpha
Helix 23	AC5	C	144	149	Right-handed alpha
Helix 24	AC6	H	62	65	Right-handed 310
Helix 25	AC7	H	87	91	Right-handed 310
Helix 26	AC8	L	81	85	Right-handed 310

There are 17 sheets in PDB entry 9U04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	207	216	anti-parallel
Strand 5	C	51	52	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	C	163	168	anti-parallel
Strand 3	C	114	120	anti-parallel
Strand 4	C	207	216	anti-parallel
Strand 5	C	70	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	94	first strand
Strand 2	A	253	271	anti-parallel
Strand 3	A	125	142	anti-parallel
Strand 4	A	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	125	142	anti-parallel
Strand 3	A	253	271	anti-parallel
Strand 4	C	39	40	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	109	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	154	160	anti-parallel
Strand 4	A	182	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	26	29	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	87	first strand
Strand 2	B	90	94	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	274	279	parallel
Strand 3	B	168	180	anti-parallel
Strand 4	B	315	332	anti-parallel
Strand 5	B	133	141	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	225	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	296	308	anti-parallel
Strand 4	B	187	197	anti-parallel
Strand 5	B	264	268	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	128	135	anti-parallel
Strand 4	C	152	158	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	177	178	first strand
Strand 2	C	107	111	anti-parallel
Strand 3	C	221	225	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	7	first strand
Strand 2	H	18	26	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	35	40	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	105	109	parallel
Strand 3	L	87	93	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	23	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U04

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U04