Analysis of interatomic Contacts of Structural Units in PDB entry:
9U0G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U0G entry

There are 2 chains in PDB entry 9U0G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 34	LYS 728
B	GLN 33	LEU 719

There are 46 helices in PDB entry 9U0G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	49	Right-handed alpha
Helix 2	AA2	A	56	61	Right-handed 310
Helix 3	AA3	A	66	70	Right-handed 310
Helix 4	AA4	A	95	99	Right-handed 310
Helix 5	AA5	A	120	125	Right-handed 310
Helix 6	AA6	A	221	227	Right-handed 310
Helix 7	AA7	A	245	251	Right-handed 310
Helix 8	AA8	A	269	276	Right-handed 310
Helix 9	AA9	A	294	300	Right-handed 310
Helix 10	AB1	A	318	323	Right-handed alpha
Helix 11	AB2	A	343	349	Right-handed 310
Helix 12	AB3	A	392	398	Right-handed 310
Helix 13	AB4	A	416	422	Right-handed 310
Helix 14	AB5	A	440	446	Right-handed 310
Helix 15	AB6	A	464	470	Right-handed 310
Helix 16	AB7	A	488	494	Right-handed 310
Helix 17	AB8	A	512	518	Right-handed 310
Helix 18	AB9	A	550	554	Right-handed 310
Helix 19	AC1	A	628	634	Right-handed 310
Helix 20	AC2	A	652	658	Right-handed 310
Helix 21	AC3	A	676	682	Right-handed 310
Helix 22	AC4	A	704	708	Right-handed 310
Helix 23	AC5	A	709	714	Right-handed 310
Helix 24	AC6	B	35	49	Right-handed alpha
Helix 25	AC7	B	56	61	Right-handed 310
Helix 26	AC8	B	66	70	Right-handed 310
Helix 27	AC9	B	95	99	Right-handed 310
Helix 28	AD1	B	120	125	Right-handed 310
Helix 29	AD2	B	221	227	Right-handed 310
Helix 30	AD3	B	245	251	Right-handed 310
Helix 31	AD4	B	269	276	Right-handed 310
Helix 32	AD5	B	294	300	Right-handed 310
Helix 33	AD6	B	318	323	Right-handed alpha
Helix 34	AD7	B	343	349	Right-handed 310
Helix 35	AD8	B	392	398	Right-handed 310
Helix 36	AD9	B	416	422	Right-handed 310
Helix 37	AE1	B	440	446	Right-handed 310
Helix 38	AE2	B	464	470	Right-handed 310
Helix 39	AE3	B	488	494	Right-handed 310
Helix 40	AE4	B	512	518	Right-handed 310
Helix 41	AE5	B	550	554	Right-handed 310
Helix 42	AE6	B	628	634	Right-handed 310
Helix 43	AE7	B	652	658	Right-handed 310
Helix 44	AE8	B	676	682	Right-handed 310
Helix 45	AE9	B	704	708	Right-handed 310
Helix 46	AF1	B	709	714	Right-handed 310

There are 17 sheets in PDB entry 9U0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	52	first strand
Strand 2	A	91	92	anti-parallel
Strand 3	A	114	115	parallel

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There are 24 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	76	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	107	109	parallel
Strand 4	A	131	133	parallel
Strand 5	A	156	158	parallel
Strand 6	A	181	183	parallel
Strand 7	A	208	210	parallel
Strand 8	A	232	234	parallel
Strand 9	A	256	258	parallel
Strand 10	A	281	283	parallel
Strand 11	A	305	307	parallel
Strand 12	A	330	332	parallel
Strand 13	A	354	356	parallel
Strand 14	A	379	381	parallel
Strand 15	A	403	405	parallel
Strand 16	A	427	429	parallel
Strand 17	A	451	453	parallel
Strand 18	A	475	477	parallel
Strand 19	A	499	501	parallel
Strand 20	A	523	525	parallel
Strand 21	A	615	617	parallel
Strand 22	A	639	641	parallel
Strand 23	A	663	665	parallel
Strand 24	A	687	689	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	139	140	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	239	241	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	410	412	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	460	461	first strand
Strand 2	A	482	483	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	557	558	first strand
Strand 2	A	574	575	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	626	first strand
Strand 2	A	646	649	parallel
Strand 3	A	670	671	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	52	first strand
Strand 2	B	91	92	anti-parallel
Strand 3	B	114	115	parallel

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There are 24 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	76	first strand
Strand 2	B	79	84	anti-parallel
Strand 3	B	107	109	parallel
Strand 4	B	131	133	parallel
Strand 5	B	156	158	parallel
Strand 6	B	181	183	parallel
Strand 7	B	208	210	parallel
Strand 8	B	232	234	parallel
Strand 9	B	256	258	parallel
Strand 10	B	281	283	parallel
Strand 11	B	305	307	parallel
Strand 12	B	330	332	parallel
Strand 13	B	354	356	parallel
Strand 14	B	379	381	parallel
Strand 15	B	403	405	parallel
Strand 16	B	427	429	parallel
Strand 17	B	451	453	parallel
Strand 18	B	475	477	parallel
Strand 19	B	499	501	parallel
Strand 20	B	523	525	parallel
Strand 21	B	615	617	parallel
Strand 22	B	639	641	parallel
Strand 23	B	663	665	parallel
Strand 24	B	687	689	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	139	140	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	219	first strand
Strand 2	B	239	241	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	410	412	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	461	first strand
Strand 2	B	482	483	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	557	559	first strand
Strand 2	B	573	575	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	625	first strand
Strand 2	B	646	649	parallel
Strand 3	B	670	671	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	697	698	first strand
Strand 2	B	719	720	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U0G

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U0G