Analysis of interatomic Contacts of Structural Units in PDB entry:
9U3E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U3E entry

There are 2 chains in PDB entry 9U3E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	SER 383
B	SER 1	SER 383

There are 34 helices in PDB entry 9U3E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	58	60	Right-handed 310
Helix 3	AA3	A	61	79	Right-handed alpha
Helix 4	AA4	A	98	111	Right-handed alpha
Helix 5	AA5	A	120	127	Right-handed alpha
Helix 6	AA6	A	149	163	Right-handed alpha
Helix 7	AA7	A	201	203	Right-handed 310
Helix 8	AA8	A	204	209	Right-handed alpha
Helix 9	AA9	A	210	213	Right-handed 310
Helix 10	AB1	A	231	236	Right-handed alpha
Helix 11	AB2	A	237	240	Right-handed 310
Helix 12	AB3	A	288	302	Right-handed alpha
Helix 13	AB4	A	303	306	Right-handed 310
Helix 14	AB5	A	346	348	Right-handed 310
Helix 15	AB6	A	349	364	Right-handed alpha
Helix 16	AB7	A	370	374	Right-handed 310
Helix 17	AB8	A	377	381	Right-handed 310
Helix 18	AB9	B	12	25	Right-handed alpha
Helix 19	AC1	B	58	60	Right-handed 310
Helix 20	AC2	B	61	79	Right-handed alpha
Helix 21	AC3	B	98	111	Right-handed alpha
Helix 22	AC4	B	120	127	Right-handed alpha
Helix 23	AC5	B	149	163	Right-handed alpha
Helix 24	AC6	B	201	203	Right-handed 310
Helix 25	AC7	B	204	209	Right-handed alpha
Helix 26	AC8	B	210	213	Right-handed 310
Helix 27	AC9	B	231	236	Right-handed alpha
Helix 28	AD1	B	237	240	Right-handed 310
Helix 29	AD2	B	288	302	Right-handed alpha
Helix 30	AD3	B	303	306	Right-handed 310
Helix 31	AD4	B	346	348	Right-handed 310
Helix 32	AD5	B	349	364	Right-handed alpha
Helix 33	AD6	B	370	374	Right-handed 310
Helix 34	AD7	B	377	381	Right-handed 310

There are 10 sheets in PDB entry 9U3E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	29	32	parallel
Strand 3	A	4	9	parallel
Strand 4	A	190	199	parallel
Strand 5	A	182	187	anti-parallel
Strand 6	A	173	179	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	29	32	parallel
Strand 3	A	4	9	parallel
Strand 4	A	190	199	parallel
Strand 5	A	333	340	parallel
Strand 6	A	326	330	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	145	148	anti-parallel
Strand 3	A	84	85	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	136	141	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	243	248	parallel
Strand 5	A	251	256	anti-parallel
Strand 6	A	264	268	anti-parallel
Strand 7	A	219	228	anti-parallel
Strand 8	A	273	274	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	119	first strand
Strand 2	A	136	141	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	243	248	parallel
Strand 5	A	251	256	anti-parallel
Strand 6	A	264	268	anti-parallel
Strand 7	A	219	228	anti-parallel
Strand 8	A	309	319	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	29	32	parallel
Strand 3	B	2	9	parallel
Strand 4	B	192	199	parallel
Strand 5	B	182	184	anti-parallel
Strand 6	B	177	179	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	29	32	parallel
Strand 3	B	2	9	parallel
Strand 4	B	192	199	parallel
Strand 5	B	333	340	parallel
Strand 6	B	326	330	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	145	148	anti-parallel
Strand 3	B	84	85	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	136	141	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	243	248	parallel
Strand 5	B	251	256	anti-parallel
Strand 6	B	264	268	anti-parallel
Strand 7	B	219	228	anti-parallel
Strand 8	B	273	274	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	119	first strand
Strand 2	B	136	141	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	243	248	parallel
Strand 5	B	251	256	anti-parallel
Strand 6	B	264	268	anti-parallel
Strand 7	B	219	228	anti-parallel
Strand 8	B	309	319	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U3E

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U3E