Analysis of interatomic Contacts of Structural Units in PDB entry:
9U3R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U3R entry

There is 1 chain in PDB entry 9U3R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 98TYR 1242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9U3R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 138Right-handed alpha
Helix 2
AA2
A
145 165Right-handed alpha
Helix 3
AA3
A
165 171Right-handed alpha
Helix 4
AA4
A
171 194Right-handed alpha
Helix 5
AA5
A
219 237Right-handed alpha
Helix 6
AA6
A
241 263Right-handed alpha
Helix 7
AA7
A
279 336Right-handed alpha
Helix 8
AA8
A
339 344Right-handed alpha
Helix 9
AA9
A
402 408Right-handed alpha
Helix 10
AB1
A
411 434Right-handed alpha
Helix 11
AB2
A
457 481Right-handed alpha
Helix 12
AB3
A
511 523Right-handed alpha
Helix 13
AB4
A
533 538Right-handed alpha
Helix 14
AB5
A
550 555Right-handed alpha
Helix 15
AB6
A
560 564Right-handed 310
Helix 16
AB7
A
756 765Right-handed alpha
Helix 17
AB8
A
765 774Right-handed alpha
Helix 18
AB9
A
782 810Right-handed alpha
Helix 19
AC1
A
817 843Right-handed alpha
Helix 20
AC2
A
849 860Right-handed alpha
Helix 21
AC3
A
861 882Right-handed alpha
Helix 22
AC4
A
883 884Right-handed 310
Helix 23
AC5
A
885 889Right-handed 310
Helix 24
AC6
A
895 909Right-handed alpha
Helix 25
AC7
A
916 928Right-handed alpha
Helix 26
AC8
A
929 937Right-handed alpha
Helix 27
AC9
A
978 1034Right-handed alpha
Helix 28
AD1
A
1037 1045Right-handed alpha
Helix 29
AD2
A
1066 1071Right-handed alpha
Helix 30
AD3
A
1081 1097Right-handed alpha
Helix 31
AD4
A
1098 1102Right-handed 310
Helix 32
AD5
A
1132 1154Right-handed alpha
Helix 33
AD6
A
1188 1200Right-handed alpha
Helix 34
AD7
A
1209 1220Right-handed alpha
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There are 5 sheets in PDB entry 9U3R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
485 493anti-parallel
Strand 3
A
393 397anti-parallel
Strand 4
A
446 449anti-parallel
Strand 5
A
436 439anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
485 493anti-parallel
Strand 3
A
528 532parallel
Strand 4
A
568 571anti-parallel
Strand 5
A
546 547anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 498first strand
Strand 2
A
508 510anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1110first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1051 1063anti-parallel
Strand 4
A
1164 1176anti-parallel
Strand 5
A
1184 1187anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1104 1110first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1051 1063anti-parallel
Strand 4
A
1164 1176anti-parallel
Strand 5
A
1206 1208parallel
Strand 6
A
1235 1241anti-parallel
Strand 7
A
1224 1231anti-parallel
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