Analysis of interatomic Contacts of Structural Units in PDB entry:
9U47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U47 entry

There are 2 chains in PDB entry 9U47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 41 U 82
A
 PRO 62LYS 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9U47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 80Right-handed alpha
Helix 2
AA2
A
101 112Right-handed alpha
Helix 3
AA3
A
122 134Right-handed alpha
Helix 4
AA4
A
202 215Right-handed alpha
Helix 5
AA5
A
231 241Right-handed alpha
Helix 6
AA6
A
273 278Right-handed alpha
Helix 7
AA7
A
281 285Right-handed 310
Helix 8
AA8
A
299 316Right-handed alpha
Helix 9
AA9
A
338 346Right-handed alpha
Helix 10
AB1
A
378 395Right-handed alpha
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There are 2 sheets in PDB entry 9U47. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
114 119parallel
Strand 3
A
91 95parallel
Strand 4
A
164 167parallel
Strand 5
A
222 227parallel
Strand 6
A
258 266anti-parallel
Strand 7
A
248 255anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 296first strand
Strand 2
A
368 375anti-parallel
Strand 3
A
355 365anti-parallel
Strand 4
A
327 334anti-parallel
Strand 5
A
321 324anti-parallel
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