Analysis of interatomic Contacts of Structural Units in PDB entry:
9U4C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U4C entry

There are 2 chains in PDB entry 9U4C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 97ALA 846
B
 ILE 97ALA 846
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 78 helices in PDB entry 9U4C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 121Right-handed alpha
Helix 2
AA2
A
123 134Right-handed alpha
Helix 3
AA3
A
136 142Right-handed alpha
Helix 4
AA4
A
212 224Right-handed alpha
Helix 5
AA5
A
226 251Right-handed alpha
Helix 6
AA6
A
252 257Right-handed alpha
Helix 7
AA7
A
258 261Right-handed 310
Helix 8
AA8
A
262 269Right-handed alpha
Helix 9
AA9
A
281 289Right-handed alpha
Helix 10
AB1
A
294 306Right-handed alpha
Helix 11
AB2
A
309 331Right-handed alpha
Helix 12
AB3
A
343 363Right-handed alpha
Helix 13
AB4
A
403 410Right-handed alpha
Helix 14
AB5
A
422 427Right-handed 310
Helix 15
AB6
A
428 435Right-handed alpha
Helix 16
AB7
A
436 447Right-handed alpha
Helix 17
AB8
A
453 461Right-handed 310
Helix 18
AB9
A
462 475Right-handed alpha
Helix 19
AC1
A
481 490Right-handed alpha
Helix 20
AC2
A
505 509Right-handed 310
Helix 21
AC3
A
511 524Right-handed alpha
Helix 22
AC4
A
525 530Right-handed 310
Helix 23
AC5
A
545 560Right-handed alpha
Helix 24
AC6
A
585 602Right-handed alpha
Helix 25
AC7
A
611 618Right-handed alpha
Helix 26
AC8
A
624 626Right-handed 310
Helix 27
AC9
A
627 632Right-handed alpha
Helix 28
AD1
A
632 644Right-handed alpha
Helix 29
AD2
A
648 652Right-handed 310
Helix 30
AD3
A
686 700Right-handed alpha
Helix 31
AD4
A
703 718Right-handed alpha
Helix 32
AD5
A
722 727Right-handed alpha
Helix 33
AD6
A
728 730Right-handed 310
Helix 34
AD7
A
731 737Right-handed alpha
Helix 35
AD8
A
743 750Right-handed alpha
Helix 36
AD9
A
761 773Right-handed alpha
Helix 37
AE1
A
775 787Right-handed alpha
Helix 38
AE2
A
796 800Right-handed 310
Helix 39
AE3
A
831 841Right-handed alpha
Helix 40
AE4
B
106 121Right-handed alpha
Helix 41
AE5
B
123 134Right-handed alpha
Helix 42
AE6
B
136 142Right-handed alpha
Helix 43
AE7
B
212 224Right-handed alpha
Helix 44
AE8
B
226 251Right-handed alpha
Helix 45
AE9
B
252 257Right-handed alpha
Helix 46
AF1
B
258 261Right-handed 310
Helix 47
AF2
B
262 269Right-handed alpha
Helix 48
AF3
B
281 289Right-handed alpha
Helix 49
AF4
B
294 306Right-handed alpha
Helix 50
AF5
B
309 331Right-handed alpha
Helix 51
AF6
B
343 363Right-handed alpha
Helix 52
AF7
B
403 410Right-handed alpha
Helix 53
AF8
B
422 427Right-handed 310
Helix 54
AF9
B
428 435Right-handed alpha
Helix 55
AG1
B
436 447Right-handed alpha
Helix 56
AG2
B
453 461Right-handed 310
Helix 57
AG3
B
462 475Right-handed alpha
Helix 58
AG4
B
481 490Right-handed alpha
Helix 59
AG5
B
505 509Right-handed 310
Helix 60
AG6
B
511 524Right-handed alpha
Helix 61
AG7
B
525 530Right-handed 310
Helix 62
AG8
B
545 560Right-handed alpha
Helix 63
AG9
B
585 602Right-handed alpha
Helix 64
AH1
B
611 618Right-handed alpha
Helix 65
AH2
B
624 626Right-handed 310
Helix 66
AH3
B
627 632Right-handed alpha
Helix 67
AH4
B
632 644Right-handed alpha
Helix 68
AH5
B
648 652Right-handed 310
Helix 69
AH6
B
686 700Right-handed alpha
Helix 70
AH7
B
703 718Right-handed alpha
Helix 71
AH8
B
722 727Right-handed alpha
Helix 72
AH9
B
728 730Right-handed 310
Helix 73
AI1
B
731 737Right-handed alpha
Helix 74
AI2
B
743 750Right-handed alpha
Helix 75
AI3
B
761 773Right-handed alpha
Helix 76
AI4
B
775 787Right-handed alpha
Helix 77
AI5
B
796 800Right-handed 310
Helix 78
AI6
B
831 841Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9U4C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
416 418anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 504first strand
Strand 2
A
531 536parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 569first strand
Strand 2
A
576 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
659 662first strand
Strand 2
A
668 671anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 753first strand
Strand 2
A
803 806parallel
Strand 3
A
823 826parallel
Strand 4
A
816 818anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 365first strand
Strand 2
B
416 418anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
499 504first strand
Strand 2
B
531 536parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 569first strand
Strand 2
B
576 578anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
659 662first strand
Strand 2
B
668 671anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
752 753first strand
Strand 2
B
803 806parallel
Strand 3
B
823 826parallel
Strand 4
B
816 818anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il