Analysis of interatomic Contacts of Structural Units in PDB entry:
9U4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U4Z entry

There are 2 chains in PDB entry 9U4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 35ARG 674
B
 VAL 33MET 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9U4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 48Right-handed alpha
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
60 75Right-handed alpha
Helix 4
AA4
A
80 89Right-handed alpha
Helix 5
AA5
A
104 116Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
139 145Right-handed alpha
Helix 8
AA8
A
165 182Right-handed alpha
Helix 9
AA9
A
190 193Right-handed 310
Helix 10
AB1
A
209 224Right-handed alpha
Helix 11
AB2
A
245 251Right-handed alpha
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
289 298Right-handed alpha
Helix 14
AB5
A
309 315Right-handed alpha
Helix 15
AB6
A
325 341Right-handed alpha
Helix 16
AB7
A
348 354Right-handed alpha
Helix 17
AB8
A
401 406Right-handed alpha
Helix 18
AB9
A
409 428Right-handed alpha
Helix 19
AC1
A
434 442Right-handed alpha
Helix 20
AC2
A
452 460Right-handed alpha
Helix 21
AC3
A
466 496Right-handed alpha
Helix 22
AC4
A
505 510Right-handed alpha
Helix 23
AC5
A
525 535Right-handed alpha
Helix 24
AC6
A
541 555Right-handed alpha
Helix 25
AC7
A
621 634Right-handed alpha
Helix 26
AC8
A
652 666Right-handed alpha
Helix 27
AC9
B
38 48Right-handed alpha
Helix 28
AD1
B
61 75Right-handed alpha
Helix 29
AD2
B
80 91Right-handed alpha
Helix 30
AD3
B
104 118Right-handed alpha
Helix 31
AD4
B
120 133Right-handed alpha
Helix 32
AD5
B
140 145Right-handed alpha
Helix 33
AD6
B
165 183Right-handed alpha
Helix 34
AD7
B
191 193Right-handed 310
Helix 35
AD8
B
209 224Right-handed alpha
Helix 36
AD9
B
245 250Right-handed alpha
Helix 37
AE1
B
273 279Right-handed alpha
Helix 38
AE2
B
289 298Right-handed alpha
Helix 39
AE3
B
300 304Right-handed 310
Helix 40
AE4
B
305 308Right-handed 310
Helix 41
AE5
B
309 316Right-handed alpha
Helix 42
AE6
B
326 340Right-handed alpha
Helix 43
AE7
B
348 353Right-handed alpha
Helix 44
AE8
B
410 428Right-handed alpha
Helix 45
AE9
B
434 441Right-handed alpha
Helix 46
AF1
B
452 460Right-handed alpha
Helix 47
AF2
B
466 495Right-handed alpha
Helix 48
AF3
B
525 534Right-handed alpha
Helix 49
AF4
B
541 555Right-handed alpha
Helix 50
AF5
B
610 614Right-handed 310
Helix 51
AF6
B
621 634Right-handed alpha
Helix 52
AF7
B
652 665Right-handed alpha
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There are 8 sheets in PDB entry 9U4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
185 188parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 239first strand
Strand 2
A
267 270parallel
Strand 3
A
344 346parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
449 451parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
597 599anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
235 239parallel
Strand 3
B
266 271parallel
Strand 4
B
344 347parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 288first strand
Strand 2
B
321 322anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 593first strand
Strand 2
B
597 602anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 646first strand
Strand 2
B
674 675parallel
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