Analysis of interatomic Contacts of Structural Units in PDB entry:
9U51


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U51 entry

There are 3 chains in PDB entry 9U51 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20PRO 953
B
 ALA 2ASP 40
B
 LEU 42PRO 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 9U51. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
31 50Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
135 139Right-handed 310
Helix 7
AA7
A
159 175Right-handed alpha
Helix 8
AA8
A
188 224Right-handed alpha
Helix 9
AA9
A
225 253Right-handed alpha
Helix 10
AB1
A
259 290Right-handed alpha
Helix 11
AB2
A
294 325Right-handed alpha
Helix 12
AB3
A
329 363Right-handed alpha
Helix 13
AB4
A
377 389Right-handed alpha
Helix 14
AB5
A
389 406Right-handed alpha
Helix 15
AB6
A
407 411Right-handed 310
Helix 16
AB7
A
417 421Right-handed 310
Helix 17
AB8
A
425 436Right-handed alpha
Helix 18
AB9
A
439 444Right-handed 310
Helix 19
AC1
A
458 475Right-handed alpha
Helix 20
AC2
A
699 709Right-handed alpha
Helix 21
AC3
A
728 747Right-handed alpha
Helix 22
AC4
A
760 796Right-handed alpha
Helix 23
AC5
A
797 824Right-handed alpha
Helix 24
AC6
A
834 862Right-handed alpha
Helix 25
AC7
A
865 877Right-handed alpha
Helix 26
AC8
A
878 893Right-handed alpha
Helix 27
AC9
A
894 898Right-handed 310
Helix 28
AD1
A
900 920Right-handed alpha
Helix 29
AD2
A
920 925Right-handed alpha
Helix 30
AD3
A
925 934Right-handed alpha
Helix 31
AD4
A
935 939Right-handed 310
Helix 32
AD5
B
4 21Right-handed alpha
Helix 33
AD6
B
23 27Right-handed 310
Helix 34
AD7
B
40 55Right-handed alpha
Helix 35
AD8
B
60 65Right-handed alpha
Helix 36
AD9
B
70 83Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9U51. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 126first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
91 97anti-parallel
Strand 4
A
182 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
831 832parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 482first strand
Strand 2
A
715 722anti-parallel
Strand 3
A
446 451anti-parallel
Strand 4
A
755 759anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il