Analysis of interatomic Contacts of Structural Units in PDB entry:
9U56


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U56 entry

There is 1 chain in PDB entry 9U56 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLU 1467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9U56. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 11Right-handed alpha
Helix 2
AA2
A
29 60Right-handed alpha
Helix 3
AA3
A
74 95Right-handed alpha
Helix 4
AA4
A
107 131Right-handed alpha
Helix 5
AA5
A
140 163Right-handed alpha
Helix 6
AA6
A
164 168Right-handed 310
Helix 7
AA7
A
169 193Right-handed alpha
Helix 8
AA8
A
232 239Right-handed alpha
Helix 9
AA9
A
242 252Right-handed alpha
Helix 10
AB1
A
267 284Right-handed alpha
Helix 11
AB2
A
289 299Right-handed alpha
Helix 12
AB3
A
300 316Right-handed alpha
Helix 13
AB4
A
317 332Right-handed alpha
Helix 14
AB5
A
337 384Right-handed alpha
Helix 15
AB6
A
387 395Right-handed alpha
Helix 16
AB7
A
397 405Right-handed alpha
Helix 17
AB8
A
405 414Right-handed alpha
Helix 18
AB9
A
415 417Right-handed 310
Helix 19
AC1
A
418 438Right-handed alpha
Helix 20
AC2
A
439 449Right-handed alpha
Helix 21
AC3
A
451 483Right-handed alpha
Helix 22
AC4
A
487 495Right-handed alpha
Helix 23
AC5
A
500 547Right-handed alpha
Helix 24
AC6
A
552 594Right-handed alpha
Helix 25
AC7
A
654 664Right-handed alpha
Helix 26
AC8
A
693 699Right-handed alpha
Helix 27
AC9
A
705 716Right-handed alpha
Helix 28
AD1
A
717 725Right-handed alpha
Helix 29
AD2
A
727 731Right-handed 310
Helix 30
AD3
A
741 757Right-handed alpha
Helix 31
AD4
A
771 782Right-handed alpha
Helix 32
AD5
A
801 805Right-handed 310
Helix 33
AD6
A
821 829Right-handed alpha
Helix 34
AD7
A
829 836Right-handed alpha
Helix 35
AD8
A
904 916Right-handed alpha
Helix 36
AD9
A
917 946Right-handed alpha
Helix 37
AE1
A
955 1001Right-handed alpha
Helix 38
AE2
A
1004 1011Right-handed alpha
Helix 39
AE3
A
1012 1030Right-handed alpha
Helix 40
AE4
A
1030 1056Right-handed alpha
Helix 41
AE5
A
1056 1104Right-handed alpha
Helix 42
AE6
A
1105 1113Right-handed alpha
Helix 43
AE7
A
1117 1166Right-handed alpha
Helix 44
AE8
A
1175 1187Right-handed alpha
Helix 45
AE9
A
1188 1218Right-handed alpha
Helix 46
AF1
A
1283 1290Right-handed alpha
Helix 47
AF2
A
1306 1310Right-handed 310
Helix 48
AF3
A
1311 1317Right-handed alpha
Helix 49
AF4
A
1333 1338Right-handed alpha
Helix 50
AF5
A
1344 1355Right-handed alpha
Helix 51
AF6
A
1357 1364Right-handed alpha
Helix 52
AF7
A
1366 1369Right-handed 310
Helix 53
AF8
A
1373 1377Right-handed 310
Helix 54
AF9
A
1380 1396Right-handed alpha
Helix 55
AG1
A
1410 1425Right-handed alpha
Helix 56
AG2
A
1436 1440Right-handed 310
Helix 57
AG3
A
1459 1464Right-handed alpha
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There are 7 sheets in PDB entry 9U56. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
198 199anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
632 639first strand
Strand 2
A
614 621anti-parallel
Strand 3
A
673 676anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
807 812parallel
Strand 3
A
815 820anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
680 683first strand
Strand 2
A
760 763parallel
Strand 3
A
792 793parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1262 1265first strand
Strand 2
A
1242 1248anti-parallel
Strand 3
A
1297 1302anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1319 1322first strand
Strand 2
A
1399 1402parallel
Strand 3
A
1429 1433parallel
Strand 4
A
1272 1275parallel
Strand 5
A
1445 1449parallel
Strand 6
A
1454 1458anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1331 1332first strand
Strand 2
A
1371 1372anti-parallel
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