Analysis of interatomic Contacts of Structural Units in PDB entry:
9U5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U5Y entry

There is 1 chain in PDB entry 9U5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7TRP 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9U5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
49 59Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
89 102Right-handed alpha
Helix 5
AA5
A
107 136Right-handed alpha
Helix 6
AA6
A
143 147Right-handed alpha
Helix 7
AA7
A
149 161Right-handed alpha
Helix 8
AA8
A
163 165Right-handed 310
Helix 9
AA9
A
166 176Right-handed alpha
Helix 10
AB1
A
184 207Right-handed alpha
Helix 11
AB2
A
211 221Right-handed alpha
Helix 12
AB3
A
227 243Right-handed alpha
Helix 13
AB4
A
243 259Right-handed alpha
Helix 14
AB5
A
260 270Right-handed alpha
Helix 15
AB6
A
270 286Right-handed alpha
Helix 16
AB7
A
317 322Right-handed alpha
Helix 17
AB8
A
348 352Right-handed 310
Helix 18
AB9
A
355 374Right-handed alpha
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There are 3 sheets in PDB entry 9U5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 37first strand
Strand 2
A
43 47anti-parallel
Strand 3
A
313 316parallel
Strand 4
A
293 297anti-parallel
Strand 5
A
62 63anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
401 403anti-parallel
Strand 3
A
378 379anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 303first strand
Strand 2
A
306 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il