Analysis of interatomic Contacts of Structural Units in PDB entry:
9U60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U60 entry

There are 2 chains in PDB entry 9U60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 22PHE 449
E
 GLN 19VAL 1744
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9U60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
212 226Right-handed alpha
Helix 2
AA2
B
266 287Right-handed alpha
Helix 3
AA3
B
310 314Right-handed 310
Helix 4
AA4
B
315 325Right-handed alpha
Helix 5
AA5
B
327 332Right-handed 310
Helix 6
AA6
B
338 358Right-handed alpha
Helix 7
AA7
B
361 367Right-handed alpha
Helix 8
AA8
B
385 396Right-handed alpha
Helix 9
AA9
B
402 404Right-handed 310
Helix 10
AB1
B
419 427Right-handed alpha
Helix 11
AB2
B
441 449Right-handed alpha
Helix 12
AB3
E
90 97Right-handed alpha
Helix 13
AB4
E
115 120Right-handed alpha
Helix 14
AB5
E
315 326Right-handed alpha
Helix 15
AB6
E
329 333Right-handed 310
Helix 16
AB7
E
534 538Right-handed 310
Helix 17
AB8
E
607 611Right-handed 310
Helix 18
AB9
E
620 629Right-handed alpha
Helix 19
AC1
E
630 632Right-handed 310
Helix 20
AC2
E
642 651Right-handed alpha
Helix 21
AC3
E
762 766Right-handed 310
Helix 22
AC4
E
768 772Right-handed 310
Helix 23
AC5
E
995 1001Right-handed alpha
Helix 24
AC6
E
1014 1029Right-handed alpha
Helix 25
AC7
E
1038 1056Right-handed alpha
Helix 26
AC8
E
1072 1083Right-handed alpha
Helix 27
AC9
E
1099 1110Right-handed alpha
Helix 28
AD1
E
1137 1152Right-handed alpha
Helix 29
AD2
E
1161 1183Right-handed alpha
Helix 30
AD3
E
1189 1200Right-handed alpha
Helix 31
AD4
E
1209 1218Right-handed alpha
Helix 32
AD5
E
1260 1272Right-handed alpha
Helix 33
AD6
E
1278 1289Right-handed alpha
Helix 34
AD7
E
1410 1414Right-handed 310
Helix 35
AD8
E
1501 1507Right-handed alpha
Helix 36
AD9
E
1611 1619Right-handed alpha
Helix 37
AE1
E
1723 1740Right-handed alpha
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There are 31 sheets in PDB entry 9U60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
82 86parallel
Strand 3
B
55 57anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
47 50anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 64first strand
Strand 2
B
70 71anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
106 107anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
112 117anti-parallel
Strand 3
B
128 130anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
143 145anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 163first strand
Strand 2
B
172 177anti-parallel
Strand 3
B
188 190anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 184first strand
Strand 2
B
203 205anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 306first strand
Strand 2
B
291 298anti-parallel
Strand 3
B
253 260parallel
Strand 4
B
368 375parallel
Strand 5
B
406 413parallel
Strand 6
B
436 439parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
83 87first strand
Strand 2
E
37 44anti-parallel
Strand 3
E
22 28anti-parallel
Strand 4
E
652 655anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
30 32first strand
Strand 2
E
127 135parallel
Strand 3
E
107 113anti-parallel
Strand 4
E
51 59anti-parallel
Strand 5
E
72 77anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
140 145first strand
Strand 2
E
155 163anti-parallel
Strand 3
E
197 203anti-parallel
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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
149 150first strand
Strand 2
E
227 233parallel
Strand 3
E
211 219anti-parallel
Strand 4
E
174 179anti-parallel
Strand 5
E
184 191anti-parallel
Strand 6
E
1353 1357parallel
Strand 7
E
973 982anti-parallel
Strand 8
E
1376 1386anti-parallel
Strand 9
E
938 948anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
241 247first strand
Strand 2
E
262 270anti-parallel
Strand 3
E
309 314anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
251 253first strand
Strand 2
E
361 363parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
293 304first strand
Strand 2
E
278 287anti-parallel
Strand 3
E
337 346anti-parallel
Strand 4
E
352 357anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
367 370first strand
Strand 2
E
384 392anti-parallel
Strand 3
E
430 435anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
417 424first strand
Strand 2
E
402 410anti-parallel
Strand 3
E
443 449anti-parallel
Strand 4
E
457 463anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
472 476first strand
Strand 2
E
488 496anti-parallel
Strand 3
E
528 532anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
514 522first strand
Strand 2
E
504 511anti-parallel
Strand 3
E
540 549anti-parallel
Strand 4
E
552 561anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
571 575first strand
Strand 2
E
586 605anti-parallel
Strand 3
E
805 814anti-parallel
Strand 4
E
818 821anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
781 798first strand
Strand 2
E
586 605anti-parallel
Strand 3
E
805 814anti-parallel
Strand 4
E
825 828anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
834 837first strand
Strand 2
E
853 856anti-parallel
Strand 3
E
894 896anti-parallel
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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
849 851first strand
Strand 2
E
899 903anti-parallel
Strand 3
E
875 876anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
885 889first strand
Strand 2
E
863 869anti-parallel
Strand 3
E
908 916anti-parallel
Strand 4
E
924 932anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
958 960first strand
Strand 2
E
1366 1368anti-parallel
Strand 3
E
1332 1334anti-parallel
Strand 4
E
1339 1340anti-parallel
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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1344 1345first strand
Strand 2
E
1327 1329anti-parallel
Strand 3
E
1370 1372anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1397 1405first strand
Strand 2
E
1465 1474anti-parallel
Strand 3
E
1534 1542anti-parallel
Strand 4
E
1494 1496anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1512 1514first strand
Strand 2
E
1521 1526anti-parallel
Strand 3
E
1484 1489anti-parallel
Strand 4
E
1552 1558anti-parallel
Strand 5
E
1567 1570anti-parallel
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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1581 1584first strand
Strand 2
E
1587 1590anti-parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1598 1599first strand
Strand 2
E
1708 1711parallel
Strand 3
E
1682 1687anti-parallel
Strand 4
E
1625 1635anti-parallel
Strand 5
E
1640 1652anti-parallel
Strand 6
E
1664 1670anti-parallel
Strand 7
E
1701 1702parallel
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