Analysis of interatomic Contacts of Structural Units in PDB entry:
9U61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U61 entry

There are 4 chains in PDB entry 9U61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LYS 244	LEU 752
D	SER 672	ASN 1663
E	GLN 19	VAL 1744
C	SER 23	PRO 663

There are 81 helices in PDB entry 9U61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	266	285	Right-handed alpha
Helix 2	AA2	B	310	314	Right-handed 310
Helix 3	AA3	B	315	326	Right-handed alpha
Helix 4	AA4	B	339	358	Right-handed alpha
Helix 5	AA5	B	384	396	Right-handed alpha
Helix 6	AA6	B	419	427	Right-handed alpha
Helix 7	AA7	B	441	451	Right-handed alpha
Helix 8	AA8	B	473	478	Right-handed alpha
Helix 9	AA9	B	505	509	Right-handed 310
Helix 10	AB1	B	585	593	Right-handed alpha
Helix 11	AB2	B	599	608	Right-handed alpha
Helix 12	AB3	B	633	640	Right-handed alpha
Helix 13	AB4	B	654	659	Right-handed alpha
Helix 14	AB5	B	735	743	Right-handed alpha
Helix 15	AB6	D	675	683	Right-handed alpha
Helix 16	AB7	D	690	698	Right-handed alpha
Helix 17	AB8	D	706	711	Right-handed alpha
Helix 18	AB9	D	712	714	Right-handed 310
Helix 19	AC1	D	717	743	Right-handed alpha
Helix 20	AC2	D	987	995	Right-handed alpha
Helix 21	AC3	D	996	1001	Right-handed alpha
Helix 22	AC4	D	1002	1004	Right-handed 310
Helix 23	AC5	D	1012	1017	Right-handed 310
Helix 24	AC6	D	1018	1032	Right-handed alpha
Helix 25	AC7	D	1033	1038	Right-handed alpha
Helix 26	AC8	D	1040	1057	Right-handed alpha
Helix 27	AC9	D	1058	1060	Right-handed 310
Helix 28	AD1	D	1075	1089	Right-handed alpha
Helix 29	AD2	D	1096	1110	Right-handed alpha
Helix 30	AD3	D	1126	1131	Right-handed alpha
Helix 31	AD4	D	1132	1135	Right-handed 310
Helix 32	AD5	D	1136	1154	Right-handed alpha
Helix 33	AD6	D	1164	1179	Right-handed alpha
Helix 34	AD7	D	1185	1200	Right-handed alpha
Helix 35	AD8	D	1204	1213	Right-handed alpha
Helix 36	AD9	D	1225	1243	Right-handed alpha
Helix 37	AE1	D	1248	1259	Right-handed alpha
Helix 38	AE2	D	1269	1286	Right-handed alpha
Helix 39	AE3	D	1414	1424	Right-handed alpha
Helix 40	AE4	D	1510	1515	Right-handed 310
Helix 41	AE5	D	1528	1536	Right-handed alpha
Helix 42	AE6	D	1590	1595	Right-handed alpha
Helix 43	AE7	D	1633	1637	Right-handed 310
Helix 44	AE8	D	1639	1659	Right-handed alpha
Helix 45	AE9	E	90	97	Right-handed alpha
Helix 46	AF1	E	115	120	Right-handed alpha
Helix 47	AF2	E	315	326	Right-handed alpha
Helix 48	AF3	E	329	333	Right-handed 310
Helix 49	AF4	E	534	538	Right-handed 310
Helix 50	AF5	E	607	610	Right-handed 310
Helix 51	AF6	E	620	629	Right-handed alpha
Helix 52	AF7	E	630	632	Right-handed 310
Helix 53	AF8	E	642	651	Right-handed alpha
Helix 54	AF9	E	768	772	Right-handed 310
Helix 55	AG1	E	1000	1004	Right-handed 310
Helix 56	AG2	E	1012	1026	Right-handed alpha
Helix 57	AG3	E	1040	1060	Right-handed alpha
Helix 58	AG4	E	1075	1085	Right-handed alpha
Helix 59	AG5	E	1099	1110	Right-handed alpha
Helix 60	AG6	E	1137	1152	Right-handed alpha
Helix 61	AG7	E	1164	1186	Right-handed alpha
Helix 62	AG8	E	1189	1203	Right-handed alpha
Helix 63	AG9	E	1206	1220	Right-handed alpha
Helix 64	AH1	E	1261	1276	Right-handed alpha
Helix 65	AH2	E	1279	1292	Right-handed alpha
Helix 66	AH3	E	1293	1295	Right-handed 310
Helix 67	AH4	E	1301	1320	Right-handed alpha
Helix 68	AH5	E	1497	1506	Right-handed alpha
Helix 69	AH6	E	1611	1619	Right-handed alpha
Helix 70	AH7	E	1714	1720	Right-handed alpha
Helix 71	AH8	E	1720	1725	Right-handed alpha
Helix 72	AH9	E	1727	1740	Right-handed alpha
Helix 73	AI1	C	77	81	Right-handed 310
Helix 74	AI2	C	305	311	Right-handed alpha
Helix 75	AI3	C	315	320	Right-handed 310
Helix 76	AI4	C	432	436	Right-handed 310
Helix 77	AI5	C	483	487	Right-handed 310
Helix 78	AI6	C	522	526	Right-handed 310
Helix 79	AI7	C	600	606	Right-handed alpha
Helix 80	AI8	C	612	622	Right-handed alpha
Helix 81	AI9	C	634	642	Right-handed alpha

There are 48 sheets in PDB entry 9U61. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	453	454	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	304	first strand
Strand 2	B	291	298	anti-parallel
Strand 3	B	252	260	parallel
Strand 4	B	367	374	parallel
Strand 5	B	406	412	parallel
Strand 6	B	436	438	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	533	first strand
Strand 2	B	519	522	anti-parallel
Strand 3	B	481	485	anti-parallel
Strand 4	B	492	496	anti-parallel
Strand 5	B	501	504	anti-parallel
Strand 6	B	563	567	anti-parallel
Strand 7	B	535	540	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	618	first strand
Strand 2	B	624	630	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	663	666	first strand
Strand 2	B	727	731	anti-parallel
Strand 3	B	691	700	anti-parallel
Strand 4	B	682	686	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	771	777	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	814	817	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	771	777	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	821	824	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	787	794	first strand
Strand 2	C	580	587	anti-parallel
Strand 3	C	564	567	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	834	first strand
Strand 2	D	844	853	anti-parallel
Strand 3	D	892	902	anti-parallel
Strand 4	D	872	873	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	834	first strand
Strand 2	D	844	853	anti-parallel
Strand 3	D	1469	1470	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	838	840	first strand
Strand 2	D	922	932	parallel
Strand 3	D	906	916	anti-parallel
Strand 4	D	860	866	anti-parallel
Strand 5	D	882	888	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	936	947	first strand
Strand 2	D	1340	1350	anti-parallel
Strand 3	D	977	983	anti-parallel
Strand 4	D	1319	1324	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	962	first strand
Strand 2	D	1330	1337	anti-parallel
Strand 3	D	1293	1299	anti-parallel
Strand 4	D	1307	1312	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1361	1369	first strand
Strand 2	D	1382	1392	anti-parallel
Strand 3	D	1457	1465	anti-parallel
Strand 4	D	1411	1413	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1431	1434	first strand
Strand 2	D	1443	1448	anti-parallel
Strand 3	D	1401	1406	anti-parallel
Strand 4	D	1475	1481	anti-parallel
Strand 5	D	1488	1493	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1611	1612	first strand
Strand 2	D	1619	1621	anti-parallel
Strand 3	D	1581	1587	parallel
Strand 4	D	1558	1570	anti-parallel
Strand 5	D	1543	1553	anti-parallel
Strand 6	D	1600	1606	anti-parallel
Strand 7	D	1627	1631	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	87	first strand
Strand 2	E	37	44	anti-parallel
Strand 3	E	22	28	anti-parallel
Strand 4	E	652	655	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	129	135	parallel
Strand 3	E	107	111	anti-parallel
Strand 4	E	52	59	anti-parallel
Strand 5	E	72	76	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	145	first strand
Strand 2	E	155	163	anti-parallel
Strand 3	E	197	203	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	226	233	parallel
Strand 3	E	211	219	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	184	191	anti-parallel
Strand 6	E	1353	1357	parallel
Strand 7	E	974	982	anti-parallel
Strand 8	E	1376	1386	anti-parallel
Strand 9	E	938	948	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	241	247	first strand
Strand 2	E	263	270	anti-parallel
Strand 3	E	309	313	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	352	363	parallel
Strand 3	E	337	346	anti-parallel
Strand 4	E	278	287	anti-parallel
Strand 5	E	293	304	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	367	370	first strand
Strand 2	E	384	392	anti-parallel
Strand 3	E	430	435	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	417	424	first strand
Strand 2	E	402	410	anti-parallel
Strand 3	E	443	449	anti-parallel
Strand 4	E	457	463	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	475	476	first strand
Strand 2	E	488	493	anti-parallel
Strand 3	E	527	532	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	514	522	first strand
Strand 2	E	504	511	anti-parallel
Strand 3	E	540	549	anti-parallel
Strand 4	E	552	561	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	572	574	first strand
Strand 2	E	589	592	anti-parallel
Strand 3	E	793	795	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	580	581	first strand
Strand 2	E	825	829	parallel
Strand 3	E	805	814	anti-parallel
Strand 4	E	596	605	anti-parallel
Strand 5	E	781	790	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	580	581	first strand
Strand 2	E	825	829	parallel
Strand 3	E	805	814	anti-parallel
Strand 4	E	818	821	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	833	836	first strand
Strand 2	E	854	857	anti-parallel
Strand 3	E	893	896	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	850	851	first strand
Strand 2	E	899	900	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	884	889	first strand
Strand 2	E	863	869	anti-parallel
Strand 3	E	909	916	anti-parallel
Strand 4	E	924	931	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1339	1346	first strand
Strand 2	E	1327	1334	anti-parallel
Strand 3	E	1366	1371	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1397	1405	first strand
Strand 2	E	1464	1474	anti-parallel
Strand 3	E	1534	1542	anti-parallel
Strand 4	E	1494	1496	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1515	1518	first strand
Strand 2	E	1521	1526	anti-parallel
Strand 3	E	1484	1489	anti-parallel
Strand 4	E	1552	1558	anti-parallel
Strand 5	E	1565	1570	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1581	1584	first strand
Strand 2	E	1587	1590	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1701	1702	first strand
Strand 2	E	1664	1670	parallel
Strand 3	E	1640	1652	anti-parallel
Strand 4	E	1625	1637	anti-parallel
Strand 5	E	1682	1687	anti-parallel
Strand 6	E	1708	1711	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	39	47	anti-parallel
Strand 3	C	25	30	anti-parallel
Strand 4	C	645	648	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	35	first strand
Strand 2	C	115	124	parallel
Strand 3	C	105	112	anti-parallel
Strand 4	C	53	59	anti-parallel
Strand 5	C	70	76	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	134	first strand
Strand 2	C	144	152	anti-parallel
Strand 3	C	188	194	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	218	224	parallel
Strand 3	C	202	210	anti-parallel
Strand 4	C	162	168	anti-parallel
Strand 5	C	174	181	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	238	first strand
Strand 2	C	251	258	anti-parallel
Strand 3	C	296	301	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	338	349	parallel
Strand 3	C	323	332	anti-parallel
Strand 4	C	267	276	anti-parallel
Strand 5	C	282	283	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	338	349	parallel
Strand 3	C	323	332	anti-parallel
Strand 4	C	267	276	anti-parallel
Strand 5	C	289	293	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	370	377	anti-parallel
Strand 3	C	406	411	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	438	445	parallel
Strand 3	C	420	426	anti-parallel
Strand 4	C	388	391	anti-parallel
Strand 5	C	394	400	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	459	first strand
Strand 2	C	470	478	anti-parallel
Strand 3	C	514	520	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	507	first strand
Strand 2	C	489	496	anti-parallel
Strand 3	C	528	538	anti-parallel
Strand 4	C	544	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U61

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U61