Analysis of interatomic Contacts of Structural Units in PDB entry:
9U62

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U62 entry

There are 2 chains in PDB entry 9U62 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 672	VAL 1657
B	LYS 260	GLY 543

There are 86 helices in PDB entry 9U62. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	675	684	Right-handed alpha
Helix 2	AA2	D	685	686	Right-handed 310
Helix 3	AA3	D	687	690	Right-handed 310
Helix 4	AA4	D	691	699	Right-handed alpha
Helix 5	AA5	D	708	714	Right-handed 310
Helix 6	AA6	D	717	743	Right-handed alpha
Helix 7	AA7	D	948	953	Right-handed alpha
Helix 8	AA8	D	987	996	Right-handed alpha
Helix 9	AA9	D	1000	1004	Right-handed 310
Helix 10	AB1	D	1012	1017	Right-handed 310
Helix 11	AB2	D	1018	1032	Right-handed alpha
Helix 12	AB3	D	1033	1038	Right-handed alpha
Helix 13	AB4	D	1041	1057	Right-handed alpha
Helix 14	AB5	D	1058	1060	Right-handed 310
Helix 15	AB6	D	1075	1089	Right-handed alpha
Helix 16	AB7	D	1096	1112	Right-handed alpha
Helix 17	AB8	D	1126	1130	Right-handed 310
Helix 18	AB9	D	1136	1152	Right-handed alpha
Helix 19	AC1	D	1164	1179	Right-handed alpha
Helix 20	AC2	D	1180	1183	Right-handed 310
Helix 21	AC3	D	1185	1199	Right-handed alpha
Helix 22	AC4	D	1204	1213	Right-handed alpha
Helix 23	AC5	D	1226	1243	Right-handed alpha
Helix 24	AC6	D	1248	1257	Right-handed alpha
Helix 25	AC7	D	1268	1283	Right-handed alpha
Helix 26	AC8	D	1414	1424	Right-handed alpha
Helix 27	AC9	D	1509	1515	Right-handed alpha
Helix 28	AD1	D	1528	1536	Right-handed alpha
Helix 29	AD2	D	1589	1591	Right-handed 310
Helix 30	AD3	D	1607	1609	Right-handed 310
Helix 31	AD4	D	1645	1649	Right-handed alpha
Helix 32	AD5	B	282	302	Right-handed alpha
Helix 33	AD6	B	326	330	Right-handed 310
Helix 34	AD7	B	331	341	Right-handed alpha
Helix 35	AD8	B	343	348	Right-handed 310
Helix 36	AD9	B	354	366	Right-handed alpha
Helix 37	AE1	B	398	409	Right-handed alpha
Helix 38	AE2	B	419	421	Right-handed 310
Helix 39	AE3	B	435	441	Right-handed alpha
Helix 40	AE4	B	460	467	Right-handed alpha
Helix 41	AE5	B	488	493	Right-handed alpha
Helix 42	AE6	B	533	535	Right-handed 310
Helix 43	AE7	B	600	607	Right-handed alpha
Helix 44	AE8	B	614	623	Right-handed alpha
Helix 45	AE9	B	652	659	Right-handed alpha
Helix 46	AF1	B	660	663	Right-handed 310
Helix 47	AF2	B	748	756	Right-handed alpha
Helix 48	AF3	E	77	81	Right-handed 310
Helix 49	AF4	E	303	311	Right-handed alpha
Helix 50	AF5	E	315	320	Right-handed 310
Helix 51	AF6	E	432	436	Right-handed 310
Helix 52	AF7	E	483	487	Right-handed 310
Helix 53	AF8	E	522	526	Right-handed 310
Helix 54	AF9	E	601	606	Right-handed alpha
Helix 55	AG1	E	612	622	Right-handed alpha
Helix 56	AG2	E	634	643	Right-handed alpha
Helix 57	AG3	E	757	761	Right-handed 310
Helix 58	AG4	E	996	1001	Right-handed 310
Helix 59	AG5	E	1013	1032	Right-handed alpha
Helix 60	AG6	E	1033	1038	Right-handed alpha
Helix 61	AG7	E	1041	1052	Right-handed alpha
Helix 62	AG8	E	1076	1085	Right-handed alpha
Helix 63	AG9	E	1130	1135	Right-handed 310
Helix 64	AH1	E	1138	1154	Right-handed alpha
Helix 65	AH2	E	1154	1159	Right-handed alpha
Helix 66	AH3	E	1170	1180	Right-handed alpha
Helix 67	AH4	E	1181	1183	Right-handed 310
Helix 68	AH5	E	1188	1200	Right-handed alpha
Helix 69	AH6	E	1204	1214	Right-handed alpha
Helix 70	AH7	E	1227	1243	Right-handed alpha
Helix 71	AH8	E	1248	1260	Right-handed alpha
Helix 72	AH9	E	1270	1284	Right-handed alpha
Helix 73	AI1	E	1414	1424	Right-handed alpha
Helix 74	AI2	E	1430	1435	Right-handed alpha
Helix 75	AI3	E	1639	1641	Right-handed 310
Helix 76	AI4	E	1642	1659	Right-handed alpha
Helix 77	AI5	C	77	81	Right-handed 310
Helix 78	AI6	C	303	310	Right-handed alpha
Helix 79	AI7	C	315	320	Right-handed 310
Helix 80	AI8	C	448	452	Right-handed 310
Helix 81	AI9	C	483	487	Right-handed 310
Helix 82	AJ1	C	522	526	Right-handed 310
Helix 83	AJ2	C	540	542	Right-handed 310
Helix 84	AJ3	C	600	605	Right-handed alpha
Helix 85	AJ4	C	612	622	Right-handed alpha
Helix 86	AJ5	C	634	642	Right-handed alpha

There are 51 sheets in PDB entry 9U62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	750	752	first strand
Strand 2	B	507	515	anti-parallel
Strand 3	B	520	523	anti-parallel
Strand 4	B	578	582	anti-parallel
Strand 5	B	548	555	anti-parallel
Strand 6	B	537	541	anti-parallel
Strand 7	B	496	503	anti-parallel
Strand 8	B	507	515	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	814	817	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	775	777	first strand
Strand 2	C	592	599	anti-parallel
Strand 3	D	801	810	anti-parallel
Strand 4	D	821	824	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	787	794	first strand
Strand 2	C	580	587	anti-parallel
Strand 3	C	563	567	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	834	first strand
Strand 2	D	844	853	anti-parallel
Strand 3	D	892	902	anti-parallel
Strand 4	D	872	873	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	829	834	first strand
Strand 2	D	844	853	anti-parallel
Strand 3	D	1468	1470	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	839	840	first strand
Strand 2	D	922	932	parallel
Strand 3	D	906	916	anti-parallel
Strand 4	D	860	866	anti-parallel
Strand 5	D	882	888	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	936	947	first strand
Strand 2	D	1340	1350	anti-parallel
Strand 3	D	977	983	anti-parallel
Strand 4	D	1319	1324	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	962	first strand
Strand 2	D	1330	1336	anti-parallel
Strand 3	D	1294	1299	anti-parallel
Strand 4	D	1307	1311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1361	1369	first strand
Strand 2	D	1382	1392	anti-parallel
Strand 3	D	1457	1465	anti-parallel
Strand 4	D	1411	1413	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1431	1434	first strand
Strand 2	D	1443	1448	anti-parallel
Strand 3	D	1401	1406	anti-parallel
Strand 4	D	1475	1481	anti-parallel
Strand 5	D	1484	1493	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1611	1613	first strand
Strand 2	D	1618	1621	anti-parallel
Strand 3	D	1581	1587	parallel
Strand 4	D	1558	1570	anti-parallel
Strand 5	D	1542	1553	anti-parallel
Strand 6	D	1601	1606	anti-parallel
Strand 7	D	1627	1630	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	262	first strand
Strand 2	B	469	470	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	322	first strand
Strand 2	B	308	313	anti-parallel
Strand 3	B	268	275	parallel
Strand 4	B	380	388	parallel
Strand 5	B	423	429	parallel
Strand 6	B	452	453	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	627	636	first strand
Strand 2	B	639	648	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	684	first strand
Strand 2	B	739	744	anti-parallel
Strand 3	B	710	720	anti-parallel
Strand 4	B	702	707	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	317	318	first strand
Strand 2	P	350	351	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	342	347	first strand
Strand 2	P	365	372	anti-parallel
Strand 3	P	426	432	parallel
Strand 4	P	417	419	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	382	385	first strand
Strand 2	P	402	407	anti-parallel
Strand 3	P	450	452	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	89	first strand
Strand 2	E	39	47	anti-parallel
Strand 3	E	25	31	anti-parallel
Strand 4	E	644	648	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	115	124	parallel
Strand 3	E	105	112	anti-parallel
Strand 4	E	53	61	anti-parallel
Strand 5	E	68	76	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	134	first strand
Strand 2	E	144	152	anti-parallel
Strand 3	E	188	194	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	138	139	first strand
Strand 2	E	218	224	parallel
Strand 3	E	202	210	anti-parallel
Strand 4	E	162	168	anti-parallel
Strand 5	E	174	181	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	232	238	first strand
Strand 2	E	251	259	anti-parallel
Strand 3	E	298	302	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	244	first strand
Strand 2	E	338	349	parallel
Strand 3	E	323	332	anti-parallel
Strand 4	E	267	277	anti-parallel
Strand 5	E	280	293	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	354	356	first strand
Strand 2	E	369	377	anti-parallel
Strand 3	E	406	412	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	363	364	first strand
Strand 2	E	438	445	parallel
Strand 3	E	420	426	anti-parallel
Strand 4	E	388	391	anti-parallel
Strand 5	E	398	400	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	455	460	first strand
Strand 2	E	469	478	anti-parallel
Strand 3	E	514	521	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	499	507	first strand
Strand 2	E	489	496	anti-parallel
Strand 3	E	528	537	anti-parallel
Strand 4	E	545	554	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	563	567	first strand
Strand 2	E	580	587	anti-parallel
Strand 3	E	787	794	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	770	771	first strand
Strand 2	E	592	599	anti-parallel
Strand 3	E	801	810	anti-parallel
Strand 4	E	814	817	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	775	777	first strand
Strand 2	E	592	599	anti-parallel
Strand 3	E	801	810	anti-parallel
Strand 4	E	821	824	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	829	834	first strand
Strand 2	E	845	853	anti-parallel
Strand 3	E	892	902	anti-parallel
Strand 4	E	872	873	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	838	840	first strand
Strand 2	E	922	932	parallel
Strand 3	E	906	916	anti-parallel
Strand 4	E	860	866	anti-parallel
Strand 5	E	882	888	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	936	946	first strand
Strand 2	E	1340	1350	anti-parallel
Strand 3	E	977	984	anti-parallel
Strand 4	E	1319	1324	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	958	962	first strand
Strand 2	E	1330	1336	anti-parallel
Strand 3	E	1293	1297	anti-parallel
Strand 4	E	1309	1311	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1361	1369	first strand
Strand 2	E	1383	1392	anti-parallel
Strand 3	E	1457	1465	anti-parallel
Strand 4	E	1411	1413	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1427	1428	first strand
Strand 2	E	1443	1448	anti-parallel
Strand 3	E	1401	1406	anti-parallel
Strand 4	E	1475	1481	anti-parallel
Strand 5	E	1488	1493	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1504	1507	first strand
Strand 2	E	1510	1513	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1568	1569	first strand
Strand 2	E	1544	1553	anti-parallel
Strand 3	E	1558	1564	anti-parallel
Strand 4	E	1581	1587	anti-parallel
Strand 5	E	1618	1621	parallel
Strand 6	E	1611	1613	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1568	1569	first strand
Strand 2	E	1544	1553	anti-parallel
Strand 3	E	1601	1605	anti-parallel
Strand 4	E	1627	1631	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	89	first strand
Strand 2	C	39	47	anti-parallel
Strand 3	C	25	29	anti-parallel
Strand 4	C	647	648	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	36	first strand
Strand 2	C	115	125	parallel
Strand 3	C	105	112	anti-parallel
Strand 4	C	53	62	anti-parallel
Strand 5	C	68	76	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	134	first strand
Strand 2	C	144	152	anti-parallel
Strand 3	C	188	194	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	218	224	parallel
Strand 3	C	202	210	anti-parallel
Strand 4	C	162	168	anti-parallel
Strand 5	C	174	181	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	238	first strand
Strand 2	C	251	258	anti-parallel
Strand 3	C	298	302	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	338	349	parallel
Strand 3	C	323	332	anti-parallel
Strand 4	C	267	277	anti-parallel
Strand 5	C	280	293	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	357	first strand
Strand 2	C	369	377	anti-parallel
Strand 3	C	406	412	anti-parallel

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There are 5 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	438	445	parallel
Strand 3	C	420	426	anti-parallel
Strand 4	C	388	391	anti-parallel
Strand 5	C	399	400	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	459	first strand
Strand 2	C	470	478	anti-parallel
Strand 3	C	514	520	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	499	507	first strand
Strand 2	C	489	496	anti-parallel
Strand 3	C	528	538	anti-parallel
Strand 4	C	544	554	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U62

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U62