Analysis of interatomic Contacts of Structural Units in PDB entry:
9U65

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U65 entry

There are 6 chains in PDB entry 9U65 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	ILE 321
D	PHE 9	TYR 157
B	ASP 1	ILE 321
E	PHE 9	TYR 157
C	ASP 1	ILE 321
F	PHE 9	TYR 157

There are 21 helices in PDB entry 9U65. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	62	Right-handed alpha
Helix 2	AA2	A	64	73	Right-handed 310
Helix 3	AA3	A	97	107	Right-handed alpha
Helix 4	AA4	A	184	193	Right-handed alpha
Helix 5	AA5	D	37	58	Right-handed alpha
Helix 6	AA6	D	74	124	Right-handed alpha
Helix 7	AA7	D	145	155	Right-handed alpha
Helix 8	AA8	B	56	62	Right-handed alpha
Helix 9	AA9	B	64	73	Right-handed 310
Helix 10	AB1	B	97	107	Right-handed alpha
Helix 11	AB2	B	184	193	Right-handed alpha
Helix 12	AB3	E	37	58	Right-handed alpha
Helix 13	AB4	E	74	124	Right-handed alpha
Helix 14	AB5	E	145	155	Right-handed alpha
Helix 15	AB6	C	56	62	Right-handed alpha
Helix 16	AB7	C	64	73	Right-handed 310
Helix 17	AB8	C	97	107	Right-handed alpha
Helix 18	AB9	C	184	193	Right-handed alpha
Helix 19	AC1	F	37	58	Right-handed alpha
Helix 20	AC2	F	74	124	Right-handed alpha
Helix 21	AC3	F	145	155	Right-handed alpha

There are 28 sheets in PDB entry 9U65. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	24	26	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	30	first strand
Strand 2	A	314	315	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	44	first strand
Strand 2	A	272	277	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	265	267	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	248	251	anti-parallel
Strand 5	A	148	149	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	115	first strand
Strand 2	A	253	259	anti-parallel
Strand 3	A	172	181	anti-parallel
Strand 4	A	226	234	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	138	first strand
Strand 2	A	141	143	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	239	244	anti-parallel
Strand 3	A	199	202	anti-parallel
Strand 4	A	207	210	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	280	first strand
Strand 2	A	285	286	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	305	306	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	24	26	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	44	first strand
Strand 2	B	272	277	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	50	51	first strand
Strand 2	B	79	81	parallel
Strand 3	B	265	267	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	115	first strand
Strand 2	B	253	259	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	226	234	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	138	first strand
Strand 2	B	141	143	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	149	first strand
Strand 2	B	250	251	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	166	first strand
Strand 2	B	239	244	anti-parallel
Strand 3	B	199	202	anti-parallel
Strand 4	B	207	210	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	280	first strand
Strand 2	B	285	286	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	292	293	first strand
Strand 2	B	305	306	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	24	26	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	272	277	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	265	267	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	115	first strand
Strand 2	C	253	259	anti-parallel
Strand 3	C	172	181	anti-parallel
Strand 4	C	226	234	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	138	first strand
Strand 2	C	141	143	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	149	first strand
Strand 2	C	250	251	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	239	244	anti-parallel
Strand 3	C	199	202	anti-parallel
Strand 4	C	207	210	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	280	first strand
Strand 2	C	285	286	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	292	293	first strand
Strand 2	C	305	306	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U65

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U65