Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U6F entry

There are 8 chains in PDB entry 9U6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 578
B	MET 1	ALA 578
C	MET 1	ALA 578
D	LYS 5	PRO 474
E	LEU 3	ILE 470
F	ASP 2	GLY 472
G	VAL 4	GLU 209
H	MET 1	LEU 104

There are135 helices in PDB entry 9U6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	99	Right-handed alpha
Helix 2	AA2	A	209	215	Right-handed alpha
Helix 3	AA3	A	233	245	Right-handed alpha
Helix 4	AA4	A	258	269	Right-handed alpha
Helix 5	AA5	A	270	272	Right-handed 310
Helix 6	AA6	A	280	283	Right-handed 310
Helix 7	AA7	A	297	316	Right-handed alpha
Helix 8	AA8	A	326	342	Right-handed alpha
Helix 9	AA9	A	346	350	Right-handed 310
Helix 10	AB1	A	351	352	Right-handed 310
Helix 11	AB2	A	353	363	Right-handed alpha
Helix 12	AB3	A	386	390	Right-handed 310
Helix 13	AB4	A	393	401	Right-handed alpha
Helix 14	AB5	A	410	416	Right-handed alpha
Helix 15	AB6	A	435	443	Right-handed alpha
Helix 16	AB7	A	446	472	Right-handed alpha
Helix 17	AB8	A	473	476	Right-handed 310
Helix 18	AB9	A	477	494	Right-handed alpha
Helix 19	AC1	A	508	531	Right-handed alpha
Helix 20	AC2	A	535	540	Right-handed alpha
Helix 21	AC3	A	542	551	Right-handed alpha
Helix 22	AC4	A	552	554	Right-handed 310
Helix 23	AC5	A	558	577	Right-handed alpha
Helix 24	AC6	B	90	99	Right-handed alpha
Helix 25	AC7	B	209	215	Right-handed alpha
Helix 26	AC8	B	233	245	Right-handed alpha
Helix 27	AC9	B	258	269	Right-handed alpha
Helix 28	AD1	B	270	272	Right-handed 310
Helix 29	AD2	B	280	283	Right-handed 310
Helix 30	AD3	B	295	316	Right-handed alpha
Helix 31	AD4	B	326	341	Right-handed alpha
Helix 32	AD5	B	353	363	Right-handed alpha
Helix 33	AD6	B	393	403	Right-handed alpha
Helix 34	AD7	B	410	416	Right-handed alpha
Helix 35	AD8	B	431	443	Right-handed alpha
Helix 36	AD9	B	446	464	Right-handed alpha
Helix 37	AE1	B	464	471	Right-handed alpha
Helix 38	AE2	B	472	476	Right-handed 310
Helix 39	AE3	B	477	495	Right-handed alpha
Helix 40	AE4	B	508	532	Right-handed alpha
Helix 41	AE5	B	535	540	Right-handed alpha
Helix 42	AE6	B	542	550	Right-handed alpha
Helix 43	AE7	B	551	554	Right-handed 310
Helix 44	AE8	B	558	576	Right-handed alpha
Helix 45	AE9	C	90	99	Right-handed alpha
Helix 46	AF1	C	209	215	Right-handed alpha
Helix 47	AF2	C	233	245	Right-handed alpha
Helix 48	AF3	C	258	269	Right-handed alpha
Helix 49	AF4	C	280	283	Right-handed 310
Helix 50	AF5	C	296	316	Right-handed alpha
Helix 51	AF6	C	326	341	Right-handed alpha
Helix 52	AF7	C	353	363	Right-handed alpha
Helix 53	AF8	C	386	390	Right-handed 310
Helix 54	AF9	C	393	401	Right-handed alpha
Helix 55	AG1	C	410	416	Right-handed alpha
Helix 56	AG2	C	431	443	Right-handed alpha
Helix 57	AG3	C	446	472	Right-handed alpha
Helix 58	AG4	C	473	476	Right-handed 310
Helix 59	AG5	C	477	494	Right-handed alpha
Helix 60	AG6	C	508	532	Right-handed alpha
Helix 61	AG7	C	535	541	Right-handed alpha
Helix 62	AG8	C	543	550	Right-handed alpha
Helix 63	AG9	C	551	554	Right-handed 310
Helix 64	AH1	C	558	578	Right-handed alpha
Helix 65	AH2	D	85	89	Right-handed 310
Helix 66	AH3	D	120	124	Right-handed 310
Helix 67	AH4	D	135	140	Right-handed alpha
Helix 68	AH5	D	159	171	Right-handed alpha
Helix 69	AH6	D	174	178	Right-handed 310
Helix 70	AH7	D	197	210	Right-handed alpha
Helix 71	AH8	D	212	215	Right-handed 310
Helix 72	AH9	D	227	250	Right-handed alpha
Helix 73	AI1	D	259	274	Right-handed alpha
Helix 74	AI2	D	279	283	Right-handed 310
Helix 75	AI3	D	286	296	Right-handed alpha
Helix 76	AI4	D	323	333	Right-handed alpha
Helix 77	AI5	D	340	346	Right-handed alpha
Helix 78	AI6	D	361	366	Right-handed alpha
Helix 79	AI7	D	374	400	Right-handed alpha
Helix 80	AI8	D	405	422	Right-handed alpha
Helix 81	AI9	D	431	444	Right-handed alpha
Helix 82	AJ1	D	455	463	Right-handed alpha
Helix 83	AJ2	E	85	89	Right-handed 310
Helix 84	AJ3	E	135	140	Right-handed alpha
Helix 85	AJ4	E	159	171	Right-handed alpha
Helix 86	AJ5	E	174	179	Right-handed 310
Helix 87	AJ6	E	197	211	Right-handed alpha
Helix 88	AJ7	E	212	215	Right-handed 310
Helix 89	AJ8	E	227	250	Right-handed alpha
Helix 90	AJ9	E	259	273	Right-handed alpha
Helix 91	AK1	E	286	296	Right-handed alpha
Helix 92	AK2	E	317	320	Right-handed 310
Helix 93	AK3	E	323	333	Right-handed alpha
Helix 94	AK4	E	340	346	Right-handed alpha
Helix 95	AK5	E	361	365	Right-handed 310
Helix 96	AK6	E	374	400	Right-handed alpha
Helix 97	AK7	E	405	422	Right-handed alpha
Helix 98	AK8	E	431	444	Right-handed alpha
Helix 99	AK9	E	445	446	Right-handed 310
Helix 100	AL1	E	447	451	Right-handed 310
Helix 101	AL2	E	455	463	Right-handed alpha
Helix 102	AL3	F	85	89	Right-handed 310
Helix 103	AL4	F	135	140	Right-handed alpha
Helix 104	AL5	F	159	171	Right-handed alpha
Helix 105	AL6	F	174	179	Right-handed alpha
Helix 106	AL7	F	197	212	Right-handed alpha
Helix 107	AL8	F	213	215	Right-handed 310
Helix 108	AL9	F	228	232	Right-handed 310
Helix 109	AM1	F	233	250	Right-handed alpha
Helix 110	AM2	F	259	274	Right-handed alpha
Helix 111	AM3	F	279	283	Right-handed 310
Helix 112	AM4	F	284	285	Right-handed 310
Helix 113	AM5	F	286	296	Right-handed alpha
Helix 114	AM6	F	317	320	Right-handed 310
Helix 115	AM7	F	323	333	Right-handed alpha
Helix 116	AM8	F	340	346	Right-handed alpha
Helix 117	AM9	F	361	366	Right-handed alpha
Helix 118	AN1	F	374	400	Right-handed alpha
Helix 119	AN2	F	401	404	Right-handed 310
Helix 120	AN3	F	405	422	Right-handed alpha
Helix 121	AN4	F	431	444	Right-handed alpha
Helix 122	AN5	F	445	446	Right-handed 310
Helix 123	AN6	F	447	451	Right-handed 310
Helix 124	AN7	F	455	463	Right-handed alpha
Helix 125	AN8	F	466	471	Right-handed alpha
Helix 126	AN9	G	7	71	Right-handed alpha
Helix 127	AO1	G	72	82	Right-handed alpha
Helix 128	AO2	G	122	167	Right-handed alpha
Helix 129	AO3	G	167	209	Right-handed alpha
Helix 130	AO4	H	6	16	Right-handed alpha
Helix 131	AO5	H	25	38	Right-handed alpha
Helix 132	AO6	H	55	58	Right-handed 310
Helix 133	AO7	H	59	64	Right-handed alpha
Helix 134	AO8	H	76	83	Right-handed alpha
Helix 135	AO9	H	85	98	Right-handed alpha

There are 27 sheets in PDB entry 9U6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 38 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	26	30	first strand
Strand 4	A	35	43	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	63	70	anti-parallel
Strand 7	B	3	10	first strand
Strand 8	B	13	17	anti-parallel
Strand 9	B	27	30	first strand
Strand 10	B	35	43	anti-parallel
Strand 11	B	46	51	anti-parallel
Strand 12	B	63	66	anti-parallel
Strand 13	C	3	10	first strand
Strand 14	C	13	17	anti-parallel
Strand 15	C	26	30	first strand
Strand 16	C	35	43	anti-parallel
Strand 17	C	46	51	anti-parallel
Strand 18	C	63	70	anti-parallel
Strand 19	D	11	15	anti-parallel
Strand 20	D	18	22	anti-parallel
Strand 21	D	32	36	first strand
Strand 22	D	42	51	anti-parallel
Strand 23	D	54	59	anti-parallel
Strand 24	D	72	77	anti-parallel
Strand 25	E	7	8	first strand
Strand 26	E	11	15	anti-parallel
Strand 27	E	18	21	anti-parallel
Strand 28	E	32	36	first strand
Strand 29	E	42	51	anti-parallel
Strand 30	E	55	59	anti-parallel
Strand 31	E	72	77	anti-parallel
Strand 32	F	7	8	first strand
Strand 33	F	11	15	anti-parallel
Strand 34	F	18	21	anti-parallel
Strand 35	F	32	36	first strand
Strand 36	F	42	51	anti-parallel
Strand 37	F	55	59	anti-parallel
Strand 38	F	72	77	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	185	188	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	A	197	198	first strand
Strand 3	A	223	227	first strand
Strand 4	A	249	255	first strand
Strand 5	A	285	290	parallel
Strand 6	A	319	324	parallel
Strand 7	A	366	369	anti-parallel
Strand 8	A	375	384	anti-parallel
Strand 9	A	405	406	parallel
Strand 10	A	428	429	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	148	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	173	175	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	197	198	first strand
Strand 3	B	223	227	first strand
Strand 4	B	249	253	first strand
Strand 5	B	285	288	parallel
Strand 6	B	319	324	parallel
Strand 7	B	366	369	anti-parallel
Strand 8	B	375	384	anti-parallel
Strand 9	B	405	406	parallel
Strand 10	B	428	429	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	148	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	173	175	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	218	219	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 10 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	197	199	first strand
Strand 3	C	223	227	first strand
Strand 4	C	249	255	first strand
Strand 5	C	285	290	parallel
Strand 6	C	319	324	parallel
Strand 7	C	366	369	anti-parallel
Strand 8	C	375	384	anti-parallel
Strand 9	C	405	406	parallel
Strand 10	C	428	429	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	173	175	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	217	223	parallel
Strand 3	D	187	196	parallel
Strand 4	D	252	257	parallel
Strand 5	D	307	315	parallel
Strand 6	D	152	154	parallel
Strand 7	D	335	338	parallel
Strand 8	D	358	359	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	144	145	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	217	223	parallel
Strand 3	E	187	196	parallel
Strand 4	E	252	257	parallel
Strand 5	E	307	315	parallel
Strand 6	E	152	154	parallel
Strand 7	E	335	338	parallel
Strand 8	E	358	359	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	125	first strand
Strand 2	E	300	301	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	144	145	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	94	first strand
Strand 2	F	217	223	parallel
Strand 3	F	188	196	parallel
Strand 4	F	252	257	parallel
Strand 5	F	307	315	parallel
Strand 6	F	152	154	parallel
Strand 7	F	335	338	parallel
Strand 8	F	358	359	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	124	125	first strand
Strand 2	F	300	301	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	130	132	anti-parallel
Strand 3	F	172	173	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	96	first strand
Strand 2	G	99	106	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	2	5	parallel
Strand 3	H	44	48	parallel
Strand 4	H	70	74	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6F