Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U6M entry

There are 13 chains in PDB entry 9U6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
N
 ALA 327GLY 639
O
 GLY 8LEU 80
P
 GLY 8LEU 80
Q
 SER 7LEU 80
R
 GLY 8LEU 80
S
 GLY 8LEU 80
T
 GLY 8LEU 80
U
 GLY 8LEU 80
V
 GLY 8LEU 80
W
 GLY 8LEU 80
X
 GLY 9LEU 80
Y
 GLY 8LEU 80
Z
 GLY 8LEU 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 9U6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
N
327 329Right-handed 310
Helix 2
AA2
N
330 336Right-handed alpha
Helix 3
AA3
N
347 349Right-handed 310
Helix 4
AA4
N
350 360Right-handed alpha
Helix 5
AA5
N
361 363Right-handed 310
Helix 6
AA6
N
365 386Right-handed alpha
Helix 7
AA7
N
399 425Right-handed alpha
Helix 8
AA8
N
430 434Right-handed 310
Helix 9
AA9
N
457 489Right-handed alpha
Helix 10
AB1
N
492 517Right-handed alpha
Helix 11
AB2
N
521 540Right-handed alpha
Helix 12
AB3
N
546 558Right-handed alpha
Helix 13
AB4
N
559 561Right-handed 310
Helix 14
AB5
N
562 587Right-handed alpha
Helix 15
AB6
N
596 628Right-handed alpha
Helix 16
AB7
N
628 634Right-handed alpha
Helix 17
AB8
O
10 15Right-handed alpha
Helix 18
AB9
O
16 46Right-handed alpha
Helix 19
AC1
O
51 60Right-handed alpha
Helix 20
AC2
O
63 75Right-handed alpha
Helix 21
AC3
O
76 80Right-handed 310
Helix 22
AC4
P
11 45Right-handed alpha
Helix 23
AC5
P
46 47Right-handed 310
Helix 24
AC6
P
48 50Right-handed 310
Helix 25
AC7
P
51 61Right-handed alpha
Helix 26
AC8
P
63 78Right-handed alpha
Helix 27
AC9
Q
10 45Right-handed alpha
Helix 28
AD1
Q
51 61Right-handed alpha
Helix 29
AD2
Q
63 79Right-handed alpha
Helix 30
AD3
R
9 46Right-handed alpha
Helix 31
AD4
R
48 50Right-handed 310
Helix 32
AD5
R
51 59Right-handed alpha
Helix 33
AD6
R
60 62Right-handed 310
Helix 34
AD7
R
63 79Right-handed alpha
Helix 35
AD8
S
11 48Right-handed alpha
Helix 36
AD9
S
51 61Right-handed alpha
Helix 37
AE1
S
62 67Right-handed alpha
Helix 38
AE2
S
69 80Right-handed alpha
Helix 39
AE3
T
14 46Right-handed alpha
Helix 40
AE4
T
48 50Right-handed 310
Helix 41
AE5
T
51 61Right-handed alpha
Helix 42
AE6
T
62 65Right-handed 310
Helix 43
AE7
T
66 78Right-handed alpha
Helix 44
AE8
U
10 15Right-handed alpha
Helix 45
AE9
U
17 48Right-handed alpha
Helix 46
AF1
U
51 60Right-handed alpha
Helix 47
AF2
U
63 78Right-handed alpha
Helix 48
AF3
V
10 48Right-handed alpha
Helix 49
AF4
V
51 60Right-handed alpha
Helix 50
AF5
V
61 64Right-handed 310
Helix 51
AF6
V
65 78Right-handed alpha
Helix 52
AF7
W
11 48Right-handed alpha
Helix 53
AF8
W
51 60Right-handed alpha
Helix 54
AF9
W
63 80Right-handed alpha
Helix 55
AG1
X
10 33Right-handed alpha
Helix 56
AG2
X
33 48Right-handed alpha
Helix 57
AG3
X
51 59Right-handed alpha
Helix 58
AG4
X
60 63Right-handed 310
Helix 59
AG5
X
64 78Right-handed alpha
Helix 60
AG6
Y
11 37Right-handed alpha
Helix 61
AG7
Y
38 46Right-handed alpha
Helix 62
AG8
Y
48 50Right-handed 310
Helix 63
AG9
Y
51 61Right-handed alpha
Helix 64
AH1
Y
63 79Right-handed alpha
Helix 65
AH2
Z
14 48Right-handed alpha
Helix 66
AH3
Z
51 60Right-handed alpha
Helix 67
AH4
Z
63 80Right-handed alpha
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There are 2 sheets in PDB entry 9U6M. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
390 391first strand
Strand 2
N
396 397anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
438 439first strand
Strand 2
N
447 448parallel
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