Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U6V entry

There are 8 chains in PDB entry 9U6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 578
B	MET 1	ALA 578
C	MET 1	ALA 578
D	LYS 5	PRO 474
E	LEU 3	ILE 470
F	ASP 2	GLY 472
G	VAL 4	GLU 209
H	MET 1	LEU 104

There are130 helices in PDB entry 9U6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	209	215	Right-handed alpha
Helix 3	AA3	A	233	245	Right-handed alpha
Helix 4	AA4	A	258	269	Right-handed alpha
Helix 5	AA5	A	270	272	Right-handed 310
Helix 6	AA6	A	280	283	Right-handed 310
Helix 7	AA7	A	297	315	Right-handed alpha
Helix 8	AA8	A	327	341	Right-handed alpha
Helix 9	AA9	A	353	363	Right-handed alpha
Helix 10	AB1	A	386	390	Right-handed 310
Helix 11	AB2	A	393	400	Right-handed alpha
Helix 12	AB3	A	410	416	Right-handed alpha
Helix 13	AB4	A	435	443	Right-handed alpha
Helix 14	AB5	A	446	472	Right-handed alpha
Helix 15	AB6	A	477	494	Right-handed alpha
Helix 16	AB7	A	508	532	Right-handed alpha
Helix 17	AB8	A	535	540	Right-handed alpha
Helix 18	AB9	A	543	550	Right-handed alpha
Helix 19	AC1	A	558	574	Right-handed alpha
Helix 20	AC2	B	90	99	Right-handed alpha
Helix 21	AC3	B	209	215	Right-handed alpha
Helix 22	AC4	B	233	245	Right-handed alpha
Helix 23	AC5	B	258	269	Right-handed alpha
Helix 24	AC6	B	270	272	Right-handed 310
Helix 25	AC7	B	280	283	Right-handed 310
Helix 26	AC8	B	295	301	Right-handed alpha
Helix 27	AC9	B	301	315	Right-handed alpha
Helix 28	AD1	B	327	341	Right-handed alpha
Helix 29	AD2	B	346	350	Right-handed 310
Helix 30	AD3	B	353	363	Right-handed alpha
Helix 31	AD4	B	393	401	Right-handed alpha
Helix 32	AD5	B	410	416	Right-handed alpha
Helix 33	AD6	B	431	443	Right-handed alpha
Helix 34	AD7	B	446	463	Right-handed alpha
Helix 35	AD8	B	464	471	Right-handed alpha
Helix 36	AD9	B	472	476	Right-handed 310
Helix 37	AE1	B	477	494	Right-handed alpha
Helix 38	AE2	B	508	533	Right-handed alpha
Helix 39	AE3	B	535	542	Right-handed alpha
Helix 40	AE4	B	543	550	Right-handed alpha
Helix 41	AE5	B	551	553	Right-handed 310
Helix 42	AE6	B	558	576	Right-handed alpha
Helix 43	AE7	C	90	99	Right-handed alpha
Helix 44	AE8	C	209	215	Right-handed alpha
Helix 45	AE9	C	233	245	Right-handed alpha
Helix 46	AF1	C	259	269	Right-handed alpha
Helix 47	AF2	C	270	272	Right-handed 310
Helix 48	AF3	C	280	283	Right-handed 310
Helix 49	AF4	C	297	315	Right-handed alpha
Helix 50	AF5	C	327	341	Right-handed alpha
Helix 51	AF6	C	353	363	Right-handed alpha
Helix 52	AF7	C	386	390	Right-handed 310
Helix 53	AF8	C	393	401	Right-handed alpha
Helix 54	AF9	C	410	415	Right-handed alpha
Helix 55	AG1	C	435	443	Right-handed alpha
Helix 56	AG2	C	446	472	Right-handed alpha
Helix 57	AG3	C	473	476	Right-handed 310
Helix 58	AG4	C	477	494	Right-handed alpha
Helix 59	AG5	C	508	531	Right-handed alpha
Helix 60	AG6	C	536	541	Right-handed alpha
Helix 61	AG7	C	543	550	Right-handed alpha
Helix 62	AG8	C	551	554	Right-handed 310
Helix 63	AG9	C	558	577	Right-handed alpha
Helix 64	AH1	D	85	89	Right-handed 310
Helix 65	AH2	D	120	124	Right-handed 310
Helix 66	AH3	D	135	140	Right-handed alpha
Helix 67	AH4	D	159	171	Right-handed alpha
Helix 68	AH5	D	174	178	Right-handed 310
Helix 69	AH6	D	197	210	Right-handed alpha
Helix 70	AH7	D	212	215	Right-handed 310
Helix 71	AH8	D	227	250	Right-handed alpha
Helix 72	AH9	D	259	274	Right-handed alpha
Helix 73	AI1	D	279	283	Right-handed 310
Helix 74	AI2	D	286	296	Right-handed alpha
Helix 75	AI3	D	323	333	Right-handed alpha
Helix 76	AI4	D	340	346	Right-handed alpha
Helix 77	AI5	D	361	366	Right-handed alpha
Helix 78	AI6	D	374	400	Right-handed alpha
Helix 79	AI7	D	405	422	Right-handed alpha
Helix 80	AI8	D	431	444	Right-handed alpha
Helix 81	AI9	D	455	463	Right-handed alpha
Helix 82	AJ1	D	466	473	Right-handed 310
Helix 83	AJ2	E	85	89	Right-handed 310
Helix 84	AJ3	E	135	142	Right-handed alpha
Helix 85	AJ4	E	159	171	Right-handed alpha
Helix 86	AJ5	E	174	178	Right-handed 310
Helix 87	AJ6	E	197	212	Right-handed alpha
Helix 88	AJ7	E	213	215	Right-handed 310
Helix 89	AJ8	E	227	250	Right-handed alpha
Helix 90	AJ9	E	259	271	Right-handed alpha
Helix 91	AK1	E	286	296	Right-handed alpha
Helix 92	AK2	E	317	320	Right-handed 310
Helix 93	AK3	E	323	331	Right-handed alpha
Helix 94	AK4	E	340	346	Right-handed alpha
Helix 95	AK5	E	362	366	Right-handed 310
Helix 96	AK6	E	374	400	Right-handed alpha
Helix 97	AK7	E	401	404	Right-handed 310
Helix 98	AK8	E	405	422	Right-handed alpha
Helix 99	AK9	E	431	444	Right-handed alpha
Helix 100	AL1	E	455	463	Right-handed alpha
Helix 101	AL2	F	85	89	Right-handed 310
Helix 102	AL3	F	135	140	Right-handed alpha
Helix 103	AL4	F	159	171	Right-handed alpha
Helix 104	AL5	F	174	179	Right-handed alpha
Helix 105	AL6	F	197	211	Right-handed alpha
Helix 106	AL7	F	213	215	Right-handed 310
Helix 107	AL8	F	228	232	Right-handed 310
Helix 108	AL9	F	233	250	Right-handed alpha
Helix 109	AM1	F	259	274	Right-handed alpha
Helix 110	AM2	F	286	296	Right-handed alpha
Helix 111	AM3	F	323	333	Right-handed alpha
Helix 112	AM4	F	340	346	Right-handed alpha
Helix 113	AM5	F	361	366	Right-handed alpha
Helix 114	AM6	F	374	400	Right-handed alpha
Helix 115	AM7	F	401	404	Right-handed 310
Helix 116	AM8	F	405	422	Right-handed alpha
Helix 117	AM9	F	431	444	Right-handed alpha
Helix 118	AN1	F	445	446	Right-handed 310
Helix 119	AN2	F	447	451	Right-handed 310
Helix 120	AN3	F	455	463	Right-handed alpha
Helix 121	AN4	F	467	472	Right-handed alpha
Helix 122	AN5	G	7	71	Right-handed alpha
Helix 123	AN6	G	71	81	Right-handed alpha
Helix 124	AN7	G	120	167	Right-handed alpha
Helix 125	AN8	G	167	206	Right-handed alpha
Helix 126	AN9	H	6	16	Right-handed alpha
Helix 127	AO1	H	25	39	Right-handed alpha
Helix 128	AO2	H	54	64	Right-handed alpha
Helix 129	AO3	H	76	81	Right-handed alpha
Helix 130	AO4	H	85	98	Right-handed alpha

There are 24 sheets in PDB entry 9U6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 39 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	9	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	27	30	first strand
Strand 4	A	35	43	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	63	66	anti-parallel
Strand 7	B	3	9	first strand
Strand 8	B	13	17	anti-parallel
Strand 9	B	27	30	first strand
Strand 10	B	35	43	anti-parallel
Strand 11	B	46	51	anti-parallel
Strand 12	B	63	66	anti-parallel
Strand 13	C	3	10	first strand
Strand 14	C	13	17	anti-parallel
Strand 15	C	27	30	first strand
Strand 16	C	35	43	anti-parallel
Strand 17	C	46	51	anti-parallel
Strand 18	C	63	66	anti-parallel
Strand 19	D	7	8	first strand
Strand 20	D	11	15	anti-parallel
Strand 21	D	18	22	anti-parallel
Strand 22	D	32	36	first strand
Strand 23	D	42	50	anti-parallel
Strand 24	D	54	59	anti-parallel
Strand 25	D	72	77	anti-parallel
Strand 26	E	7	8	first strand
Strand 27	E	11	15	anti-parallel
Strand 28	E	18	21	anti-parallel
Strand 29	E	32	36	first strand
Strand 30	E	42	51	anti-parallel
Strand 31	E	55	59	anti-parallel
Strand 32	E	72	77	anti-parallel
Strand 33	F	7	8	first strand
Strand 34	F	11	15	anti-parallel
Strand 35	F	18	21	anti-parallel
Strand 36	F	32	36	first strand
Strand 37	F	42	51	anti-parallel
Strand 38	F	55	59	anti-parallel
Strand 39	F	72	77	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	185	188	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	197	198	first strand
Strand 3	A	223	227	first strand
Strand 4	A	249	257	first strand
Strand 5	A	285	291	parallel
Strand 6	A	319	324	parallel
Strand 7	A	366	369	anti-parallel
Strand 8	A	375	384	anti-parallel
Strand 9	A	405	406	parallel
Strand 10	A	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	148	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	164	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	173	175	anti-parallel
Strand 4	A	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	197	199	first strand
Strand 3	B	223	227	first strand
Strand 4	B	249	257	first strand
Strand 5	B	285	291	parallel
Strand 6	B	319	325	parallel
Strand 7	B	366	369	anti-parallel
Strand 8	B	375	384	anti-parallel
Strand 9	B	405	406	parallel
Strand 10	B	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	148	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	164	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	173	175	anti-parallel
Strand 4	B	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	197	198	first strand
Strand 3	C	223	227	first strand
Strand 4	C	249	255	first strand
Strand 5	C	285	290	parallel
Strand 6	C	319	324	parallel
Strand 7	C	366	369	anti-parallel
Strand 8	C	375	384	anti-parallel
Strand 9	C	405	406	parallel
Strand 10	C	428	429	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	173	175	anti-parallel
Strand 4	C	180	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	152	154	first strand
Strand 3	D	187	196	first strand
Strand 4	D	217	223	parallel
Strand 5	D	252	257	parallel
Strand 6	D	299	300	first strand
Strand 7	D	307	315	anti-parallel
Strand 8	D	335	338	parallel
Strand 9	D	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	144	145	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	217	223	parallel
Strand 3	E	187	196	parallel
Strand 4	E	252	257	parallel
Strand 5	E	307	315	parallel
Strand 6	E	152	154	parallel
Strand 7	E	335	338	parallel
Strand 8	E	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	144	145	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	152	154	first strand
Strand 3	F	188	192	first strand
Strand 4	F	217	220	parallel
Strand 5	F	252	257	parallel
Strand 6	F	299	300	first strand
Strand 7	F	307	315	anti-parallel
Strand 8	F	335	338	parallel
Strand 9	F	358	359	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	172	173	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	96	first strand
Strand 2	G	99	106	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	2	5	parallel
Strand 3	H	44	48	parallel
Strand 4	H	70	74	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6V