Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6X

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U6X entry

There are 8 chains in PDB entry 9U6X (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 578
B	MET 1	ALA 578
C	MET 1	ALA 578
D	LYS 5	PRO 474
E	LEU 3	ILE 470
F	ASP 2	GLY 472
G	VAL 4	GLU 209
H	MET 1	LEU 104

There are119 helices in PDB entry 9U6X. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	209	215	Right-handed alpha
Helix 3	AA3	A	233	245	Right-handed alpha
Helix 4	AA4	A	258	269	Right-handed alpha
Helix 5	AA5	A	280	283	Right-handed 310
Helix 6	AA6	A	297	317	Right-handed alpha
Helix 7	AA7	A	327	342	Right-handed alpha
Helix 8	AA8	A	353	363	Right-handed alpha
Helix 9	AA9	A	393	401	Right-handed alpha
Helix 10	AB1	A	410	416	Right-handed alpha
Helix 11	AB2	A	431	443	Right-handed alpha
Helix 12	AB3	A	446	472	Right-handed alpha
Helix 13	AB4	A	473	476	Right-handed 310
Helix 14	AB5	A	477	494	Right-handed alpha
Helix 15	AB6	A	508	532	Right-handed alpha
Helix 16	AB7	A	535	540	Right-handed alpha
Helix 17	AB8	A	543	550	Right-handed alpha
Helix 18	AB9	A	558	578	Right-handed alpha
Helix 19	AC1	B	90	99	Right-handed alpha
Helix 20	AC2	B	209	215	Right-handed alpha
Helix 21	AC3	B	233	245	Right-handed alpha
Helix 22	AC4	B	258	272	Right-handed alpha
Helix 23	AC5	B	280	283	Right-handed 310
Helix 24	AC6	B	295	301	Right-handed alpha
Helix 25	AC7	B	301	317	Right-handed alpha
Helix 26	AC8	B	326	341	Right-handed alpha
Helix 27	AC9	B	353	363	Right-handed alpha
Helix 28	AD1	B	393	401	Right-handed alpha
Helix 29	AD2	B	410	416	Right-handed alpha
Helix 30	AD3	B	431	443	Right-handed alpha
Helix 31	AD4	B	446	463	Right-handed alpha
Helix 32	AD5	B	464	469	Right-handed alpha
Helix 33	AD6	B	472	476	Right-handed 310
Helix 34	AD7	B	477	495	Right-handed alpha
Helix 35	AD8	B	508	533	Right-handed alpha
Helix 36	AD9	B	538	542	Right-handed 310
Helix 37	AE1	B	543	551	Right-handed alpha
Helix 38	AE2	B	552	554	Right-handed 310
Helix 39	AE3	B	558	577	Right-handed alpha
Helix 40	AE4	C	90	99	Right-handed alpha
Helix 41	AE5	C	209	215	Right-handed alpha
Helix 42	AE6	C	233	245	Right-handed alpha
Helix 43	AE7	C	259	269	Right-handed alpha
Helix 44	AE8	C	270	272	Right-handed 310
Helix 45	AE9	C	280	283	Right-handed 310
Helix 46	AF1	C	297	316	Right-handed alpha
Helix 47	AF2	C	327	342	Right-handed alpha
Helix 48	AF3	C	346	350	Right-handed 310
Helix 49	AF4	C	351	352	Right-handed 310
Helix 50	AF5	C	353	363	Right-handed alpha
Helix 51	AF6	C	393	401	Right-handed alpha
Helix 52	AF7	C	410	416	Right-handed alpha
Helix 53	AF8	C	435	443	Right-handed alpha
Helix 54	AF9	C	446	471	Right-handed alpha
Helix 55	AG1	C	477	494	Right-handed alpha
Helix 56	AG2	C	508	533	Right-handed alpha
Helix 57	AG3	C	535	541	Right-handed alpha
Helix 58	AG4	C	543	550	Right-handed alpha
Helix 59	AG5	C	551	554	Right-handed 310
Helix 60	AG6	C	558	577	Right-handed alpha
Helix 61	AG7	D	85	89	Right-handed 310
Helix 62	AG8	D	135	140	Right-handed alpha
Helix 63	AG9	D	159	171	Right-handed alpha
Helix 64	AH1	D	197	210	Right-handed alpha
Helix 65	AH2	D	212	215	Right-handed 310
Helix 66	AH3	D	227	249	Right-handed alpha
Helix 67	AH4	D	259	274	Right-handed alpha
Helix 68	AH5	D	286	296	Right-handed alpha
Helix 69	AH6	D	323	333	Right-handed alpha
Helix 70	AH7	D	340	346	Right-handed alpha
Helix 71	AH8	D	361	366	Right-handed alpha
Helix 72	AH9	D	374	400	Right-handed alpha
Helix 73	AI1	D	401	404	Right-handed 310
Helix 74	AI2	D	405	423	Right-handed alpha
Helix 75	AI3	D	431	444	Right-handed alpha
Helix 76	AI4	D	455	463	Right-handed alpha
Helix 77	AI5	D	467	473	Right-handed alpha
Helix 78	AI6	E	85	89	Right-handed 310
Helix 79	AI7	E	135	142	Right-handed alpha
Helix 80	AI8	E	159	171	Right-handed alpha
Helix 81	AI9	E	197	212	Right-handed alpha
Helix 82	AJ1	E	227	250	Right-handed alpha
Helix 83	AJ2	E	259	273	Right-handed alpha
Helix 84	AJ3	E	286	296	Right-handed alpha
Helix 85	AJ4	E	323	333	Right-handed alpha
Helix 86	AJ5	E	340	346	Right-handed alpha
Helix 87	AJ6	E	361	366	Right-handed alpha
Helix 88	AJ7	E	374	399	Right-handed alpha
Helix 89	AJ8	E	405	423	Right-handed alpha
Helix 90	AJ9	E	431	444	Right-handed alpha
Helix 91	AK1	F	85	89	Right-handed 310
Helix 92	AK2	F	135	140	Right-handed alpha
Helix 93	AK3	F	159	171	Right-handed alpha
Helix 94	AK4	F	174	179	Right-handed alpha
Helix 95	AK5	F	197	211	Right-handed alpha
Helix 96	AK6	F	212	216	Right-handed 310
Helix 97	AK7	F	228	232	Right-handed 310
Helix 98	AK8	F	233	250	Right-handed alpha
Helix 99	AK9	F	259	274	Right-handed alpha
Helix 100	AL1	F	286	296	Right-handed alpha
Helix 101	AL2	F	323	333	Right-handed alpha
Helix 102	AL3	F	340	346	Right-handed alpha
Helix 103	AL4	F	361	366	Right-handed alpha
Helix 104	AL5	F	374	397	Right-handed alpha
Helix 105	AL6	F	400	404	Right-handed 310
Helix 106	AL7	F	405	423	Right-handed alpha
Helix 107	AL8	F	431	444	Right-handed alpha
Helix 108	AL9	F	455	463	Right-handed alpha
Helix 109	AM1	F	466	470	Right-handed 310
Helix 110	AM2	G	7	72	Right-handed alpha
Helix 111	AM3	G	72	83	Right-handed alpha
Helix 112	AM4	G	120	167	Right-handed alpha
Helix 113	AM5	G	167	207	Right-handed alpha
Helix 114	AM6	H	6	17	Right-handed alpha
Helix 115	AM7	H	25	39	Right-handed alpha
Helix 116	AM8	H	54	59	Right-handed alpha
Helix 117	AM9	H	59	64	Right-handed alpha
Helix 118	AN1	H	76	83	Right-handed alpha
Helix 119	AN2	H	86	99	Right-handed alpha

There are 36 sheets in PDB entry 9U6X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	10	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	46	51	anti-parallel
Strand 4	A	35	43	anti-parallel
Strand 5	A	27	30	anti-parallel
Strand 6	A	63	66	anti-parallel
Strand 7	A	3	10	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	185	188	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	285	290	parallel
Strand 3	A	249	255	parallel
Strand 4	A	319	324	parallel
Strand 5	A	375	384	parallel
Strand 6	A	366	369	anti-parallel
Strand 7	A	197	198	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	285	290	parallel
Strand 3	A	249	255	parallel
Strand 4	A	319	324	parallel
Strand 5	A	375	384	parallel
Strand 6	A	223	227	parallel
Strand 7	A	405	406	parallel
Strand 8	A	428	429	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	A	164	166	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	156	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	140	first strand
Strand 2	A	143	145	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	10	first strand
Strand 2	B	13	17	anti-parallel
Strand 3	B	47	51	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	27	30	anti-parallel
Strand 6	B	63	66	anti-parallel
Strand 7	B	3	10	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	285	288	parallel
Strand 3	B	249	254	parallel
Strand 4	B	319	325	parallel
Strand 5	B	375	384	parallel
Strand 6	B	368	369	anti-parallel
Strand 7	B	197	198	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	285	288	parallel
Strand 3	B	249	254	parallel
Strand 4	B	319	325	parallel
Strand 5	B	375	384	parallel
Strand 6	B	223	227	parallel
Strand 7	B	405	406	parallel
Strand 8	B	428	429	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	154	156	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	140	first strand
Strand 2	B	143	148	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	174	first strand
Strand 2	B	180	181	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	10	first strand
Strand 2	C	13	17	anti-parallel
Strand 3	C	46	51	anti-parallel
Strand 4	C	35	43	anti-parallel
Strand 5	C	27	30	anti-parallel
Strand 6	C	63	66	anti-parallel
Strand 7	C	3	10	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	285	290	parallel
Strand 3	C	249	255	parallel
Strand 4	C	319	324	parallel
Strand 5	C	375	384	parallel
Strand 6	C	366	369	anti-parallel
Strand 7	C	197	199	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	84	first strand
Strand 2	C	285	290	parallel
Strand 3	C	249	255	parallel
Strand 4	C	319	324	parallel
Strand 5	C	375	384	parallel
Strand 6	C	223	227	parallel
Strand 7	C	405	406	parallel
Strand 8	C	428	429	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	165	166	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	173	175	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	134	139	first strand
Strand 2	C	144	148	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	72	75	anti-parallel
Strand 3	D	32	36	anti-parallel
Strand 4	D	42	47	anti-parallel
Strand 5	D	54	59	anti-parallel
Strand 6	D	18	22	anti-parallel
Strand 7	D	11	15	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	217	223	parallel
Strand 3	D	187	196	parallel
Strand 4	D	252	257	parallel
Strand 5	D	307	315	parallel
Strand 6	D	299	300	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	93	first strand
Strand 2	D	217	223	parallel
Strand 3	D	187	196	parallel
Strand 4	D	252	257	parallel
Strand 5	D	307	315	parallel
Strand 6	D	152	154	parallel
Strand 7	D	335	338	parallel
Strand 8	D	358	359	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	144	145	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	8	first strand
Strand 2	E	72	74	anti-parallel
Strand 3	E	32	36	anti-parallel
Strand 4	E	42	47	anti-parallel
Strand 5	E	55	59	anti-parallel
Strand 6	E	18	21	anti-parallel
Strand 7	E	14	15	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	217	223	parallel
Strand 3	E	187	196	parallel
Strand 4	E	252	257	parallel
Strand 5	E	307	315	parallel
Strand 6	E	152	154	parallel
Strand 7	E	335	338	parallel
Strand 8	E	358	359	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	130	132	anti-parallel
Strand 3	E	172	173	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	72	75	anti-parallel
Strand 3	F	32	36	anti-parallel
Strand 4	F	42	50	anti-parallel
Strand 5	F	55	59	anti-parallel
Strand 6	F	18	21	anti-parallel
Strand 7	F	11	15	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	218	223	parallel
Strand 3	F	188	196	parallel
Strand 4	F	252	257	parallel
Strand 5	F	307	315	parallel
Strand 6	F	152	154	parallel
Strand 7	F	335	338	parallel
Strand 8	F	358	359	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	132	first strand
Strand 2	F	172	173	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	96	first strand
Strand 2	G	99	106	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	2	5	parallel
Strand 3	H	44	48	parallel
Strand 4	H	70	74	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U6X

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6X