Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U6Y entry

There are 8 chains in PDB entry 9U6Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 578
B	MET 1	ALA 578
C	MET 1	ALA 578
D	LYS 5	PRO 474
E	LEU 3	ILE 470
F	ASP 2	GLY 472
G	VAL 4	GLU 209
H	MET 1	LEU 104

There are123 helices in PDB entry 9U6Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	98	Right-handed alpha
Helix 2	AA2	A	209	215	Right-handed alpha
Helix 3	AA3	A	233	245	Right-handed alpha
Helix 4	AA4	A	258	269	Right-handed alpha
Helix 5	AA5	A	270	272	Right-handed 310
Helix 6	AA6	A	280	283	Right-handed 310
Helix 7	AA7	A	297	315	Right-handed alpha
Helix 8	AA8	A	327	342	Right-handed alpha
Helix 9	AA9	A	353	363	Right-handed alpha
Helix 10	AB1	A	386	390	Right-handed 310
Helix 11	AB2	A	393	401	Right-handed alpha
Helix 12	AB3	A	410	416	Right-handed alpha
Helix 13	AB4	A	435	443	Right-handed alpha
Helix 14	AB5	A	446	472	Right-handed alpha
Helix 15	AB6	A	473	476	Right-handed 310
Helix 16	AB7	A	477	494	Right-handed alpha
Helix 17	AB8	A	508	532	Right-handed alpha
Helix 18	AB9	A	535	541	Right-handed alpha
Helix 19	AC1	A	543	550	Right-handed alpha
Helix 20	AC2	A	558	577	Right-handed alpha
Helix 21	AC3	B	90	99	Right-handed alpha
Helix 22	AC4	B	209	216	Right-handed alpha
Helix 23	AC5	B	233	245	Right-handed alpha
Helix 24	AC6	B	258	269	Right-handed alpha
Helix 25	AC7	B	280	283	Right-handed 310
Helix 26	AC8	B	295	301	Right-handed alpha
Helix 27	AC9	B	301	315	Right-handed alpha
Helix 28	AD1	B	326	341	Right-handed alpha
Helix 29	AD2	B	353	363	Right-handed alpha
Helix 30	AD3	B	393	401	Right-handed alpha
Helix 31	AD4	B	410	416	Right-handed alpha
Helix 32	AD5	B	431	443	Right-handed alpha
Helix 33	AD6	B	446	464	Right-handed alpha
Helix 34	AD7	B	464	469	Right-handed alpha
Helix 35	AD8	B	477	494	Right-handed alpha
Helix 36	AD9	B	508	532	Right-handed alpha
Helix 37	AE1	B	536	541	Right-handed alpha
Helix 38	AE2	B	543	550	Right-handed alpha
Helix 39	AE3	B	551	554	Right-handed 310
Helix 40	AE4	B	558	577	Right-handed alpha
Helix 41	AE5	C	90	99	Right-handed alpha
Helix 42	AE6	C	209	215	Right-handed alpha
Helix 43	AE7	C	233	245	Right-handed alpha
Helix 44	AE8	C	258	269	Right-handed alpha
Helix 45	AE9	C	270	272	Right-handed 310
Helix 46	AF1	C	280	283	Right-handed 310
Helix 47	AF2	C	297	315	Right-handed alpha
Helix 48	AF3	C	327	341	Right-handed alpha
Helix 49	AF4	C	346	350	Right-handed 310
Helix 50	AF5	C	353	363	Right-handed alpha
Helix 51	AF6	C	393	400	Right-handed alpha
Helix 52	AF7	C	410	416	Right-handed alpha
Helix 53	AF8	C	435	443	Right-handed alpha
Helix 54	AF9	C	446	472	Right-handed alpha
Helix 55	AG1	C	473	476	Right-handed 310
Helix 56	AG2	C	477	494	Right-handed alpha
Helix 57	AG3	C	508	532	Right-handed alpha
Helix 58	AG4	C	535	541	Right-handed alpha
Helix 59	AG5	C	543	550	Right-handed alpha
Helix 60	AG6	C	551	554	Right-handed 310
Helix 61	AG7	C	558	576	Right-handed alpha
Helix 62	AG8	D	85	89	Right-handed 310
Helix 63	AG9	D	135	140	Right-handed alpha
Helix 64	AH1	D	159	171	Right-handed alpha
Helix 65	AH2	D	174	178	Right-handed 310
Helix 66	AH3	D	197	210	Right-handed alpha
Helix 67	AH4	D	212	215	Right-handed 310
Helix 68	AH5	D	227	250	Right-handed alpha
Helix 69	AH6	D	259	274	Right-handed alpha
Helix 70	AH7	D	286	296	Right-handed alpha
Helix 71	AH8	D	323	333	Right-handed alpha
Helix 72	AH9	D	340	346	Right-handed alpha
Helix 73	AI1	D	361	366	Right-handed alpha
Helix 74	AI2	D	374	400	Right-handed alpha
Helix 75	AI3	D	407	422	Right-handed alpha
Helix 76	AI4	D	431	444	Right-handed alpha
Helix 77	AI5	D	455	463	Right-handed alpha
Helix 78	AI6	D	466	470	Right-handed 310
Helix 79	AI7	E	85	89	Right-handed 310
Helix 80	AI8	E	135	140	Right-handed alpha
Helix 81	AI9	E	159	171	Right-handed alpha
Helix 82	AJ1	E	197	211	Right-handed alpha
Helix 83	AJ2	E	212	215	Right-handed 310
Helix 84	AJ3	E	227	250	Right-handed alpha
Helix 85	AJ4	E	259	275	Right-handed alpha
Helix 86	AJ5	E	286	296	Right-handed alpha
Helix 87	AJ6	E	323	331	Right-handed alpha
Helix 88	AJ7	E	340	346	Right-handed alpha
Helix 89	AJ8	E	361	366	Right-handed alpha
Helix 90	AJ9	E	374	397	Right-handed alpha
Helix 91	AK1	E	405	422	Right-handed alpha
Helix 92	AK2	E	431	444	Right-handed alpha
Helix 93	AK3	E	455	463	Right-handed alpha
Helix 94	AK4	F	85	89	Right-handed 310
Helix 95	AK5	F	135	140	Right-handed alpha
Helix 96	AK6	F	159	171	Right-handed alpha
Helix 97	AK7	F	174	179	Right-handed alpha
Helix 98	AK8	F	197	211	Right-handed alpha
Helix 99	AK9	F	212	215	Right-handed 310
Helix 100	AL1	F	228	231	Right-handed 310
Helix 101	AL2	F	232	250	Right-handed alpha
Helix 102	AL3	F	259	274	Right-handed alpha
Helix 103	AL4	F	286	296	Right-handed alpha
Helix 104	AL5	F	323	331	Right-handed alpha
Helix 105	AL6	F	340	346	Right-handed alpha
Helix 106	AL7	F	374	400	Right-handed alpha
Helix 107	AL8	F	401	404	Right-handed 310
Helix 108	AL9	F	405	422	Right-handed alpha
Helix 109	AM1	F	431	444	Right-handed alpha
Helix 110	AM2	F	445	446	Right-handed 310
Helix 111	AM3	F	447	451	Right-handed 310
Helix 112	AM4	F	455	463	Right-handed alpha
Helix 113	AM5	F	466	470	Right-handed 310
Helix 114	AM6	G	7	71	Right-handed alpha
Helix 115	AM7	G	72	81	Right-handed alpha
Helix 116	AM8	G	109	113	Right-handed 310
Helix 117	AM9	G	120	167	Right-handed alpha
Helix 118	AN1	G	167	205	Right-handed alpha
Helix 119	AN2	H	6	15	Right-handed alpha
Helix 120	AN3	H	25	39	Right-handed alpha
Helix 121	AN4	H	54	58	Right-handed 310
Helix 122	AN5	H	76	83	Right-handed alpha
Helix 123	AN6	H	86	99	Right-handed alpha

There are 24 sheets in PDB entry 9U6Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 39 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	13	17	anti-parallel
Strand 3	A	27	30	first strand
Strand 4	A	35	43	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	63	66	anti-parallel
Strand 7	B	3	10	first strand
Strand 8	B	13	17	anti-parallel
Strand 9	B	27	30	first strand
Strand 10	B	35	43	anti-parallel
Strand 11	B	46	51	anti-parallel
Strand 12	B	63	66	anti-parallel
Strand 13	C	3	10	first strand
Strand 14	C	13	17	anti-parallel
Strand 15	C	27	30	first strand
Strand 16	C	35	43	anti-parallel
Strand 17	C	46	51	anti-parallel
Strand 18	C	63	66	anti-parallel
Strand 19	D	7	8	first strand
Strand 20	D	11	15	anti-parallel
Strand 21	D	18	22	anti-parallel
Strand 22	D	32	36	first strand
Strand 23	D	42	50	anti-parallel
Strand 24	D	54	59	anti-parallel
Strand 25	D	72	77	anti-parallel
Strand 26	E	7	8	first strand
Strand 27	E	11	15	anti-parallel
Strand 28	E	18	21	anti-parallel
Strand 29	E	32	36	first strand
Strand 30	E	42	51	anti-parallel
Strand 31	E	55	59	anti-parallel
Strand 32	E	72	77	anti-parallel
Strand 33	F	7	8	first strand
Strand 34	F	11	15	anti-parallel
Strand 35	F	18	21	anti-parallel
Strand 36	F	32	36	first strand
Strand 37	F	42	51	anti-parallel
Strand 38	F	55	59	anti-parallel
Strand 39	F	72	77	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	185	188	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	197	198	first strand
Strand 3	A	223	227	first strand
Strand 4	A	249	257	first strand
Strand 5	A	285	291	parallel
Strand 6	A	319	324	parallel
Strand 7	A	366	369	anti-parallel
Strand 8	A	375	384	anti-parallel
Strand 9	A	405	406	parallel
Strand 10	A	428	429	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	143	148	first strand
Strand 2	A	134	140	anti-parallel
Strand 3	A	117	121	anti-parallel
Strand 4	A	164	166	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	173	175	anti-parallel
Strand 4	A	180	181	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	185	188	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	84	first strand
Strand 2	B	197	198	first strand
Strand 3	B	223	227	first strand
Strand 4	B	249	254	first strand
Strand 5	B	285	288	parallel
Strand 6	B	319	325	parallel
Strand 7	B	366	369	anti-parallel
Strand 8	B	375	384	anti-parallel
Strand 9	B	405	406	parallel
Strand 10	B	428	429	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	148	first strand
Strand 2	B	134	140	anti-parallel
Strand 3	B	117	121	anti-parallel
Strand 4	B	164	166	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	154	160	anti-parallel
Strand 3	B	173	175	anti-parallel
Strand 4	B	180	181	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	185	188	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	84	first strand
Strand 2	C	197	199	first strand
Strand 3	C	223	227	first strand
Strand 4	C	249	257	first strand
Strand 5	C	285	291	parallel
Strand 6	C	319	324	parallel
Strand 7	C	366	369	anti-parallel
Strand 8	C	375	384	anti-parallel
Strand 9	C	405	406	parallel
Strand 10	C	428	429	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	148	first strand
Strand 2	C	134	139	anti-parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	173	175	anti-parallel
Strand 4	C	180	181	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	110	113	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	152	154	first strand
Strand 3	D	187	196	first strand
Strand 4	D	217	223	parallel
Strand 5	D	252	257	parallel
Strand 6	D	299	300	first strand
Strand 7	D	307	315	anti-parallel
Strand 8	D	335	338	parallel
Strand 9	D	358	359	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	144	145	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	84	first strand
Strand 2	E	110	113	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	92	93	first strand
Strand 2	E	152	154	first strand
Strand 3	E	187	192	first strand
Strand 4	E	217	220	parallel
Strand 5	E	252	257	parallel
Strand 6	E	299	300	first strand
Strand 7	E	307	315	anti-parallel
Strand 8	E	335	338	parallel
Strand 9	E	358	359	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	131	first strand
Strand 2	E	144	145	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	84	first strand
Strand 2	F	110	113	anti-parallel

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There are 9 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	92	93	first strand
Strand 2	F	152	154	first strand
Strand 3	F	188	196	first strand
Strand 4	F	217	223	parallel
Strand 5	F	252	257	parallel
Strand 6	F	299	300	first strand
Strand 7	F	307	315	anti-parallel
Strand 8	F	335	338	parallel
Strand 9	F	358	359	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	130	132	anti-parallel
Strand 3	F	172	173	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	96	first strand
Strand 2	G	99	106	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	22	first strand
Strand 2	H	2	5	parallel
Strand 3	H	44	48	parallel
Strand 4	H	70	74	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U6Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U6Y