Analysis of interatomic Contacts of Structural Units in PDB entry:
9U7H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U7H entry

There are 3 chains in PDB entry 9U7H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 47GLU 580
C
 ALA 2ALA 2
C
 GLY 4GLU 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9U7H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 75Right-handed alpha
Helix 2
AA2
A
80 82Right-handed 310
Helix 3
AA3
A
96 106Right-handed alpha
Helix 4
AA4
A
136 154Right-handed alpha
Helix 5
AA5
A
175 182Right-handed alpha
Helix 6
AA6
A
217 222Right-handed alpha
Helix 7
AA7
A
264 276Right-handed alpha
Helix 8
AA8
A
300 319Right-handed alpha
Helix 9
AA9
A
352 365Right-handed alpha
Helix 10
AB1
A
380 389Right-handed alpha
Helix 11
AB2
A
406 427Right-handed alpha
Helix 12
AB3
A
443 457Right-handed alpha
Helix 13
AB4
A
503 511Right-handed alpha
Helix 14
AB5
A
513 517Right-handed 310
Helix 15
AB6
A
520 529Right-handed alpha
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There are 5 sheets in PDB entry 9U7H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
84 89parallel
Strand 3
A
54 59parallel
Strand 4
A
161 166parallel
Strand 5
A
238 241anti-parallel
Strand 6
A
187 190anti-parallel
Strand 7
A
281 283parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 171first strand
Strand 2
A
289 290anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
233 234anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 372first strand
Strand 2
A
342 346parallel
Strand 3
A
430 434parallel
Strand 4
A
493 502anti-parallel
Strand 5
A
464 471anti-parallel
Strand 6
A
548 551parallel
Strand 7
A
487 489anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
557 558anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il