Analysis of interatomic Contacts of Structural Units in PDB entry:
9U7J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U7J entry

There are 6 chains in PDB entry 9U7J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLU 41	HIS 560
A	GLU 41	HIS 560
B	GLU 41	HIS 560
C	GLU 41	HIS 560
D	GLU 41	HIS 560
E	GLU 41	HIS 560

There are105 helices in PDB entry 9U7J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	66	75	Right-handed alpha
Helix 2	AA2	a	80	82	Right-handed 310
Helix 3	AA3	a	96	107	Right-handed alpha
Helix 4	AA4	a	108	112	Right-handed 310
Helix 5	AA5	a	136	156	Right-handed alpha
Helix 6	AA6	a	175	182	Right-handed alpha
Helix 7	AA7	a	216	222	Right-handed alpha
Helix 8	AA8	a	244	249	Right-handed 310
Helix 9	AA9	a	265	275	Right-handed alpha
Helix 10	AB1	a	300	316	Right-handed alpha
Helix 11	AB2	a	354	364	Right-handed alpha
Helix 12	AB3	a	377	381	Right-handed 310
Helix 13	AB4	a	384	389	Right-handed alpha
Helix 14	AB5	a	409	427	Right-handed alpha
Helix 15	AB6	a	443	457	Right-handed alpha
Helix 16	AB7	a	503	510	Right-handed alpha
Helix 17	AB8	a	513	518	Right-handed alpha
Helix 18	AB9	a	520	529	Right-handed alpha
Helix 19	AC1	A	66	75	Right-handed alpha
Helix 20	AC2	A	80	82	Right-handed 310
Helix 21	AC3	A	98	107	Right-handed alpha
Helix 22	AC4	A	108	112	Right-handed 310
Helix 23	AC5	A	136	157	Right-handed alpha
Helix 24	AC6	A	176	182	Right-handed alpha
Helix 25	AC7	A	217	222	Right-handed alpha
Helix 26	AC8	A	265	276	Right-handed alpha
Helix 27	AC9	A	300	317	Right-handed alpha
Helix 28	AD1	A	352	364	Right-handed alpha
Helix 29	AD2	A	384	388	Right-handed 310
Helix 30	AD3	A	409	427	Right-handed alpha
Helix 31	AD4	A	443	459	Right-handed alpha
Helix 32	AD5	A	502	511	Right-handed alpha
Helix 33	AD6	A	513	518	Right-handed alpha
Helix 34	AD7	A	520	529	Right-handed alpha
Helix 35	AD8	A	536	540	Right-handed 310
Helix 36	AD9	B	66	75	Right-handed alpha
Helix 37	AE1	B	80	82	Right-handed 310
Helix 38	AE2	B	96	107	Right-handed alpha
Helix 39	AE3	B	108	112	Right-handed 310
Helix 40	AE4	B	136	156	Right-handed alpha
Helix 41	AE5	B	175	182	Right-handed alpha
Helix 42	AE6	B	216	222	Right-handed alpha
Helix 43	AE7	B	244	249	Right-handed 310
Helix 44	AE8	B	265	275	Right-handed alpha
Helix 45	AE9	B	300	316	Right-handed alpha
Helix 46	AF1	B	354	364	Right-handed alpha
Helix 47	AF2	B	377	381	Right-handed 310
Helix 48	AF3	B	384	389	Right-handed alpha
Helix 49	AF4	B	409	427	Right-handed alpha
Helix 50	AF5	B	443	457	Right-handed alpha
Helix 51	AF6	B	503	510	Right-handed alpha
Helix 52	AF7	B	513	518	Right-handed alpha
Helix 53	AF8	B	520	529	Right-handed alpha
Helix 54	AF9	C	66	75	Right-handed alpha
Helix 55	AG1	C	80	82	Right-handed 310
Helix 56	AG2	C	98	107	Right-handed alpha
Helix 57	AG3	C	108	112	Right-handed 310
Helix 58	AG4	C	136	157	Right-handed alpha
Helix 59	AG5	C	176	182	Right-handed alpha
Helix 60	AG6	C	217	222	Right-handed alpha
Helix 61	AG7	C	265	276	Right-handed alpha
Helix 62	AG8	C	300	317	Right-handed alpha
Helix 63	AG9	C	352	364	Right-handed alpha
Helix 64	AH1	C	384	388	Right-handed 310
Helix 65	AH2	C	409	427	Right-handed alpha
Helix 66	AH3	C	443	459	Right-handed alpha
Helix 67	AH4	C	502	511	Right-handed alpha
Helix 68	AH5	C	513	518	Right-handed alpha
Helix 69	AH6	C	520	529	Right-handed alpha
Helix 70	AH7	C	536	540	Right-handed 310
Helix 71	AH8	D	66	75	Right-handed alpha
Helix 72	AH9	D	80	82	Right-handed 310
Helix 73	AI1	D	96	107	Right-handed alpha
Helix 74	AI2	D	108	112	Right-handed 310
Helix 75	AI3	D	136	156	Right-handed alpha
Helix 76	AI4	D	175	182	Right-handed alpha
Helix 77	AI5	D	216	222	Right-handed alpha
Helix 78	AI6	D	244	249	Right-handed 310
Helix 79	AI7	D	265	275	Right-handed alpha
Helix 80	AI8	D	300	316	Right-handed alpha
Helix 81	AI9	D	354	364	Right-handed alpha
Helix 82	AJ1	D	377	381	Right-handed 310
Helix 83	AJ2	D	384	389	Right-handed alpha
Helix 84	AJ3	D	409	427	Right-handed alpha
Helix 85	AJ4	D	443	457	Right-handed alpha
Helix 86	AJ5	D	503	510	Right-handed alpha
Helix 87	AJ6	D	513	518	Right-handed alpha
Helix 88	AJ7	D	520	529	Right-handed alpha
Helix 89	AJ8	E	66	75	Right-handed alpha
Helix 90	AJ9	E	80	82	Right-handed 310
Helix 91	AK1	E	98	107	Right-handed alpha
Helix 92	AK2	E	108	112	Right-handed 310
Helix 93	AK3	E	136	157	Right-handed alpha
Helix 94	AK4	E	176	182	Right-handed alpha
Helix 95	AK5	E	217	222	Right-handed alpha
Helix 96	AK6	E	265	276	Right-handed alpha
Helix 97	AK7	E	300	317	Right-handed alpha
Helix 98	AK8	E	352	364	Right-handed alpha
Helix 99	AK9	E	384	388	Right-handed 310
Helix 100	AL1	E	409	427	Right-handed alpha
Helix 101	AL2	E	443	459	Right-handed alpha
Helix 102	AL3	E	502	511	Right-handed alpha
Helix 103	AL4	E	513	518	Right-handed alpha
Helix 104	AL5	E	520	529	Right-handed alpha
Helix 105	AL6	E	536	540	Right-handed 310

There are 24 sheets in PDB entry 9U7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	114	118	first strand
Strand 2	a	84	90	parallel
Strand 3	a	54	60	parallel
Strand 4	a	161	164	parallel
Strand 5	a	238	241	anti-parallel
Strand 6	a	187	190	anti-parallel
Strand 7	a	280	283	parallel
Strand 8	a	229	230	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	201	202	first strand
Strand 2	a	233	234	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	344	346	first strand
Strand 2	a	370	372	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	430	433	first strand
Strand 2	a	493	502	anti-parallel
Strand 3	a	464	471	anti-parallel
Strand 4	a	548	551	parallel
Strand 5	a	487	488	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	84	91	parallel
Strand 3	A	54	60	parallel
Strand 4	A	161	165	parallel
Strand 5	A	238	241	anti-parallel
Strand 6	A	187	190	anti-parallel
Strand 7	A	280	283	parallel
Strand 8	A	228	231	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	233	234	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	371	first strand
Strand 2	A	344	345	parallel
Strand 3	A	433	434	parallel
Strand 4	A	498	501	anti-parallel
Strand 5	A	464	468	anti-parallel
Strand 6	A	548	551	parallel
Strand 7	A	487	488	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	440	first strand
Strand 2	A	556	557	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	84	90	parallel
Strand 3	B	54	60	parallel
Strand 4	B	161	164	parallel
Strand 5	B	238	241	anti-parallel
Strand 6	B	187	190	anti-parallel
Strand 7	B	280	283	parallel
Strand 8	B	229	230	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	233	234	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	346	first strand
Strand 2	B	370	372	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	493	502	anti-parallel
Strand 3	B	464	471	anti-parallel
Strand 4	B	548	551	parallel
Strand 5	B	487	488	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	120	first strand
Strand 2	C	84	91	parallel
Strand 3	C	54	60	parallel
Strand 4	C	161	165	parallel
Strand 5	C	238	241	anti-parallel
Strand 6	C	187	190	anti-parallel
Strand 7	C	280	283	parallel
Strand 8	C	228	231	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	202	first strand
Strand 2	C	233	234	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	370	371	first strand
Strand 2	C	344	345	parallel
Strand 3	C	433	434	parallel
Strand 4	C	498	501	anti-parallel
Strand 5	C	464	468	anti-parallel
Strand 6	C	548	551	parallel
Strand 7	C	487	488	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	556	557	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	84	90	parallel
Strand 3	D	54	60	parallel
Strand 4	D	161	164	parallel
Strand 5	D	238	241	anti-parallel
Strand 6	D	187	190	anti-parallel
Strand 7	D	280	283	parallel
Strand 8	D	229	230	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	201	202	first strand
Strand 2	D	233	234	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	346	first strand
Strand 2	D	370	372	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	433	first strand
Strand 2	D	493	502	anti-parallel
Strand 3	D	464	471	anti-parallel
Strand 4	D	548	551	parallel
Strand 5	D	487	488	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	117	120	first strand
Strand 2	E	84	91	parallel
Strand 3	E	54	60	parallel
Strand 4	E	161	165	parallel
Strand 5	E	238	241	anti-parallel
Strand 6	E	187	190	anti-parallel
Strand 7	E	280	283	parallel
Strand 8	E	228	231	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	201	202	first strand
Strand 2	E	233	234	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	370	371	first strand
Strand 2	E	344	345	parallel
Strand 3	E	433	434	parallel
Strand 4	E	498	501	anti-parallel
Strand 5	E	464	468	anti-parallel
Strand 6	E	548	551	parallel
Strand 7	E	487	488	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	439	440	first strand
Strand 2	E	556	557	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U7J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U7J