Analysis of interatomic Contacts of Structural Units in PDB entry:
9U7V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U7V entry

There are 2 chains in PDB entry 9U7V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 556
B
 MET 1GLN 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9U7V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
15 19Right-handed 310
Helix 3
AA3
A
29 36Right-handed alpha
Helix 4
AA4
A
36 44Right-handed alpha
Helix 5
AA5
A
77 91Right-handed alpha
Helix 6
AA6
A
108 115Right-handed alpha
Helix 7
AA7
A
120 125Right-handed 310
Helix 8
AA8
A
174 190Right-handed alpha
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
231 243Right-handed alpha
Helix 11
AB2
A
259 268Right-handed alpha
Helix 12
AB3
A
299 314Right-handed alpha
Helix 13
AB4
A
331 336Right-handed alpha
Helix 14
AB5
A
342 357Right-handed alpha
Helix 15
AB6
A
366 370Right-handed 310
Helix 16
AB7
A
386 397Right-handed alpha
Helix 17
AB8
A
400 412Right-handed alpha
Helix 18
AB9
A
425 430Right-handed 310
Helix 19
AC1
A
440 445Right-handed 310
Helix 20
AC2
A
447 454Right-handed alpha
Helix 21
AC3
A
457 472Right-handed alpha
Helix 22
AC4
A
472 478Right-handed alpha
Helix 23
AC5
B
15 19Right-handed 310
Helix 24
AC6
B
29 36Right-handed alpha
Helix 25
AC7
B
36 44Right-handed alpha
Helix 26
AC8
B
77 91Right-handed alpha
Helix 27
AC9
B
110 115Right-handed alpha
Helix 28
AD1
B
120 126Right-handed 310
Helix 29
AD2
B
174 190Right-handed alpha
Helix 30
AD3
B
200 204Right-handed 310
Helix 31
AD4
B
222 227Right-handed alpha
Helix 32
AD5
B
231 243Right-handed alpha
Helix 33
AD6
B
244 247Right-handed 310
Helix 34
AD7
B
259 268Right-handed alpha
Helix 35
AD8
B
280 284Right-handed 310
Helix 36
AD9
B
299 314Right-handed alpha
Helix 37
AE1
B
331 336Right-handed alpha
Helix 38
AE2
B
342 357Right-handed alpha
Helix 39
AE3
B
366 370Right-handed 310
Helix 40
AE4
B
384 397Right-handed alpha
Helix 41
AE5
B
400 412Right-handed alpha
Helix 42
AE6
B
425 430Right-handed 310
Helix 43
AE7
B
440 445Right-handed 310
Helix 44
AE8
B
447 454Right-handed alpha
Helix 45
AE9
B
457 472Right-handed alpha
Helix 46
AF1
B
473 478Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9U7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
251 254parallel
Strand 3
A
196 199parallel
Strand 4
A
94 100parallel
Strand 5
A
47 50parallel
Strand 6
A
11 14parallel
Strand 7
A
360 364parallel
Strand 8
A
321 322parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 55first strand
Strand 2
A
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
157 160anti-parallel
Strand 3
A
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
479 483first strand
Strand 2
A
490 497anti-parallel
Strand 3
A
500 507anti-parallel
Strand 4
A
550 553anti-parallel
Strand 5
A
528 531anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
544 545anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 278first strand
Strand 2
B
251 254parallel
Strand 3
B
196 199parallel
Strand 4
B
94 100parallel
Strand 5
B
47 50parallel
Strand 6
B
11 14parallel
Strand 7
B
360 364parallel
Strand 8
B
321 322parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
67 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
157 160anti-parallel
Strand 3
B
149 152anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
479 483first strand
Strand 2
B
490 497anti-parallel
Strand 3
B
500 507anti-parallel
Strand 4
B
550 553anti-parallel
Strand 5
B
528 531anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il