Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U9D entry

There are 3 chains in PDB entry 9U9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 59ASP 88
B
 GLY 17LEU 152
B
 VAL 156ASN 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9U9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
91 97Right-handed 310
Helix 2
AA2
B
125 127Right-handed 310
Helix 3
AA3
B
144 149Right-handed 310
Helix 4
AA4
B
156 160Right-handed 310
Helix 5
AA5
B
163 169Right-handed 310
Helix 6
AA6
B
170 175Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9U9D.

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 67first strand
Strand 2
A
72 82anti-parallel
Strand 3
B
19 30anti-parallel
Strand 4
B
180 188anti-parallel
Strand 5
B
193 203anti-parallel
Strand 6
B
206 216anti-parallel
Strand 7
B
100 110parallel
Strand 8
B
113 124anti-parallel
Strand 9
B
129 136anti-parallel
Strand 10
B
60 70anti-parallel
Strand 11
B
42 51anti-parallel
Strand 12
A
60 67anti-parallel
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