Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U9E entry

There are 7 chains in PDB entry 9U9E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 135LEU 372
B
 ASP 98LYS 449
C
 PHE 8GLY 185
D
 GLN 10LYS 137
E
 G 1 G 24
F
 T 5 C 13
F
 T 15 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9U9E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
136 166Right-handed alpha
Helix 2
AA2
A
187 199Right-handed alpha
Helix 3
AA3
A
231 237Right-handed alpha
Helix 4
AA4
A
257 268Right-handed alpha
Helix 5
AA5
A
336 346Right-handed alpha
Helix 6
AA6
B
100 105Right-handed alpha
Helix 7
AA7
B
106 110Right-handed 310
Helix 8
AA8
B
136 141Right-handed 310
Helix 9
AA9
B
165 172Right-handed 310
Helix 10
AB1
B
192 204Right-handed alpha
Helix 11
AB2
B
218 227Right-handed alpha
Helix 12
AB3
B
320 334Right-handed alpha
Helix 13
AB4
B
336 341Right-handed 310
Helix 14
AB5
B
402 414Right-handed alpha
Helix 15
AB6
C
26 38Right-handed alpha
Helix 16
AB7
C
44 52Right-handed alpha
Helix 17
AB8
C
58 71Right-handed alpha
Helix 18
AB9
C
74 79Right-handed 310
Helix 19
AC1
C
84 95Right-handed alpha
Helix 20
AC2
C
113 129Right-handed alpha
Helix 21
AC3
C
131 138Right-handed alpha
Helix 22
AC4
C
152 157Right-handed alpha
Helix 23
AC5
C
162 185Right-handed alpha
Helix 24
AC6
D
13 26Right-handed alpha
Helix 25
AC7
D
38 43Right-handed alpha
Helix 26
AC8
D
51 65Right-handed alpha
Helix 27
AC9
D
69 76Right-handed alpha
Helix 28
AD1
D
83 96Right-handed alpha
Helix 29
AD2
D
112 127Right-handed alpha
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There are 3 sheets in PDB entry 9U9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 180first strand
Strand 2
A
365 369parallel
Strand 3
A
351 353parallel
Strand 4
A
205 208parallel
Strand 5
A
248 253parallel
Strand 6
A
299 306anti-parallel
Strand 7
A
271 281anti-parallel
Strand 8
A
323 327parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
444 448parallel
Strand 3
B
429 432parallel
Strand 4
B
144 149parallel
Strand 5
B
179 188parallel
Strand 6
B
359 367anti-parallel
Strand 7
B
206 217anti-parallel
Strand 8
B
385 390parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 101first strand
Strand 2
C
104 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il