Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U9F entry

There are 2 chains in PDB entry 9U9F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 49HIS 666
B
 LEU 49HIS 666
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9U9F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 104Right-handed alpha
Helix 2
AA2
A
109 121Right-handed alpha
Helix 3
AA3
A
125 137Right-handed alpha
Helix 4
AA4
A
142 147Right-handed alpha
Helix 5
AA5
A
149 159Right-handed alpha
Helix 6
AA6
A
169 180Right-handed alpha
Helix 7
AA7
A
189 213Right-handed alpha
Helix 8
AA8
A
226 246Right-handed alpha
Helix 9
AA9
A
275 298Right-handed alpha
Helix 10
AB1
A
302 322Right-handed alpha
Helix 11
AB2
A
354 359Right-handed alpha
Helix 12
AB3
A
367 375Right-handed alpha
Helix 13
AB4
A
376 382Right-handed alpha
Helix 14
AB5
A
388 403Right-handed alpha
Helix 15
AB6
A
404 406Right-handed 310
Helix 16
AB7
A
413 421Right-handed alpha
Helix 17
AB8
A
429 442Right-handed alpha
Helix 18
AB9
A
445 450Right-handed 310
Helix 19
AC1
A
455 466Right-handed alpha
Helix 20
AC2
A
471 480Right-handed alpha
Helix 21
AC3
A
484 496Right-handed alpha
Helix 22
AC4
A
510 520Right-handed alpha
Helix 23
AC5
A
566 571Right-handed alpha
Helix 24
AC6
A
571 583Right-handed alpha
Helix 25
AC7
A
605 617Right-handed alpha
Helix 26
AC8
A
617 622Right-handed alpha
Helix 27
AC9
A
635 640Right-handed alpha
Helix 28
AD1
A
656 664Right-handed alpha
Helix 29
AD2
B
99 104Right-handed alpha
Helix 30
AD3
B
109 121Right-handed alpha
Helix 31
AD4
B
125 137Right-handed alpha
Helix 32
AD5
B
142 147Right-handed alpha
Helix 33
AD6
B
149 159Right-handed alpha
Helix 34
AD7
B
169 180Right-handed alpha
Helix 35
AD8
B
189 213Right-handed alpha
Helix 36
AD9
B
226 246Right-handed alpha
Helix 37
AE1
B
275 298Right-handed alpha
Helix 38
AE2
B
302 322Right-handed alpha
Helix 39
AE3
B
354 359Right-handed alpha
Helix 40
AE4
B
367 375Right-handed alpha
Helix 41
AE5
B
376 382Right-handed alpha
Helix 42
AE6
B
388 403Right-handed alpha
Helix 43
AE7
B
404 406Right-handed 310
Helix 44
AE8
B
413 421Right-handed alpha
Helix 45
AE9
B
429 442Right-handed alpha
Helix 46
AF1
B
445 450Right-handed 310
Helix 47
AF2
B
455 466Right-handed alpha
Helix 48
AF3
B
471 480Right-handed alpha
Helix 49
AF4
B
484 496Right-handed alpha
Helix 50
AF5
B
510 520Right-handed alpha
Helix 51
AF6
B
566 571Right-handed alpha
Helix 52
AF7
B
571 583Right-handed alpha
Helix 53
AF8
B
605 617Right-handed alpha
Helix 54
AF9
B
617 622Right-handed alpha
Helix 55
AG1
B
635 640Right-handed alpha
Helix 56
AG2
B
656 664Right-handed alpha
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There are 4 sheets in PDB entry 9U9F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
410 412anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 538first strand
Strand 2
A
523 529anti-parallel
Strand 3
A
551 557anti-parallel
Strand 4
A
593 597parallel
Strand 5
A
626 629parallel
Strand 6
A
653 654parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
410 412anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
536 538first strand
Strand 2
B
523 529anti-parallel
Strand 3
B
551 557anti-parallel
Strand 4
B
593 597parallel
Strand 5
B
626 629parallel
Strand 6
B
653 654parallel
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