Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U9J entry

There are 4 chains in PDB entry 9U9J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 27	GLY 568
E	ARG 114	SER 612
M	MET 1	ILE 453
S	MET 1	SER 144

There are 74 helices in PDB entry 9U9J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	28	42	Right-handed alpha
Helix 2	AA2	B	49	55	Right-handed alpha
Helix 3	AA3	B	64	76	Right-handed alpha
Helix 4	AA4	B	77	84	Right-handed 310
Helix 5	AA5	B	86	91	Right-handed alpha
Helix 6	AA6	B	92	94	Right-handed 310
Helix 7	AA7	B	99	108	Right-handed alpha
Helix 8	AA8	B	123	130	Right-handed alpha
Helix 9	AA9	B	136	146	Right-handed alpha
Helix 10	AB1	B	158	168	Right-handed alpha
Helix 11	AB2	B	173	188	Right-handed alpha
Helix 12	AB3	B	196	208	Right-handed alpha
Helix 13	AB4	B	211	223	Right-handed alpha
Helix 14	AB5	B	229	241	Right-handed alpha
Helix 15	AB6	B	242	244	Right-handed 310
Helix 16	AB7	B	248	263	Right-handed alpha
Helix 17	AB8	B	266	286	Right-handed alpha
Helix 18	AB9	B	289	304	Right-handed alpha
Helix 19	AC1	B	308	319	Right-handed 310
Helix 20	AC2	B	325	339	Right-handed alpha
Helix 21	AC3	B	344	357	Right-handed alpha
Helix 22	AC4	B	360	376	Right-handed alpha
Helix 23	AC5	B	380	393	Right-handed alpha
Helix 24	AC6	B	395	412	Right-handed alpha
Helix 25	AC7	B	415	423	Right-handed alpha
Helix 26	AC8	B	424	430	Right-handed 310
Helix 27	AC9	B	433	446	Right-handed alpha
Helix 28	AD1	B	454	462	Right-handed alpha
Helix 29	AD2	B	470	486	Right-handed alpha
Helix 30	AD3	B	491	505	Right-handed alpha
Helix 31	AD4	B	511	523	Right-handed alpha
Helix 32	AD5	B	526	532	Right-handed alpha
Helix 33	AD6	B	552	558	Right-handed alpha
Helix 34	AD7	B	564	568	Right-handed 310
Helix 35	AD8	E	116	124	Right-handed alpha
Helix 36	AD9	E	130	141	Right-handed alpha
Helix 37	AE1	E	164	174	Right-handed alpha
Helix 38	AE2	E	182	196	Right-handed alpha
Helix 39	AE3	E	201	206	Right-handed alpha
Helix 40	AE4	E	219	234	Right-handed alpha
Helix 41	AE5	E	237	242	Right-handed 310
Helix 42	AE6	E	243	256	Right-handed alpha
Helix 43	AE7	E	274	285	Right-handed alpha
Helix 44	AE8	E	288	305	Right-handed alpha
Helix 45	AE9	E	310	325	Right-handed alpha
Helix 46	AF1	E	331	336	Right-handed alpha
Helix 47	AF2	E	340	346	Right-handed alpha
Helix 48	AF3	E	349	367	Right-handed alpha
Helix 49	AF4	E	370	380	Right-handed alpha
Helix 50	AF5	E	386	400	Right-handed alpha
Helix 51	AF6	E	405	420	Right-handed alpha
Helix 52	AF7	E	424	439	Right-handed alpha
Helix 53	AF8	E	446	457	Right-handed alpha
Helix 54	AF9	E	464	476	Right-handed alpha
Helix 55	AG1	E	482	500	Right-handed alpha
Helix 56	AG2	E	507	522	Right-handed alpha
Helix 57	AG3	E	523	525	Right-handed 310
Helix 58	AG4	E	530	543	Right-handed alpha
Helix 59	AG5	E	547	565	Right-handed alpha
Helix 60	AG6	E	568	578	Right-handed alpha
Helix 61	AG7	E	583	599	Right-handed alpha
Helix 62	AG8	E	599	607	Right-handed alpha
Helix 63	AG9	M	27	32	Right-handed alpha
Helix 64	AH1	M	33	40	Right-handed alpha
Helix 65	AH2	M	77	93	Right-handed alpha
Helix 66	AH3	M	98	106	Right-handed alpha
Helix 67	AH4	M	106	117	Right-handed alpha
Helix 68	AH5	M	126	131	Right-handed alpha
Helix 69	AH6	M	264	268	Right-handed alpha
Helix 70	AH7	S	26	42	Right-handed alpha
Helix 71	AH8	S	76	95	Right-handed alpha
Helix 72	AH9	S	99	106	Right-handed alpha
Helix 73	AI1	S	106	118	Right-handed alpha
Helix 74	AI2	S	131	144	Right-handed alpha

There are 6 sheets in PDB entry 9U9J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	55	58	first strand
Strand 2	M	67	70	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	252	255	first strand
Strand 2	M	279	287	anti-parallel
Strand 3	M	208	217	anti-parallel
Strand 4	M	186	199	anti-parallel
Strand 5	M	437	451	parallel
Strand 6	M	405	412	anti-parallel
Strand 7	M	326	332	anti-parallel
Strand 8	M	367	369	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	260	263	first strand
Strand 2	M	269	272	anti-parallel
Strand 3	M	226	230	anti-parallel
Strand 4	M	421	426	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	297	299	first strand
Strand 2	M	316	318	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	302	303	first strand
Strand 2	M	311	314	anti-parallel
Strand 3	M	376	380	anti-parallel
Strand 4	M	346	347	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	17	first strand
Strand 2	S	4	9	anti-parallel
Strand 3	S	65	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U9J

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9J