Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U9K entry

There are 7 chains in PDB entry 9U9K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 135LEU 372
B
 THR 42GLU 324
C
 THR 152GLY 185
D
 LEU 12LYS 137
E
 T 3 G 21
F
 C 7 C 12
F
 T 14 A 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9U9K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
135 167Right-handed alpha
Helix 2
AA2
A
187 200Right-handed alpha
Helix 3
AA3
A
231 238Right-handed alpha
Helix 4
AA4
A
254 256Right-handed 310
Helix 5
AA5
A
257 268Right-handed alpha
Helix 6
AA6
A
336 346Right-handed alpha
Helix 7
AA7
B
47 53Right-handed alpha
Helix 8
AA8
B
54 58Right-handed 310
Helix 9
AA9
B
111 116Right-handed alpha
Helix 10
AB1
B
137 146Right-handed alpha
Helix 11
AB2
B
163 174Right-handed alpha
Helix 12
AB3
B
201 208Right-handed alpha
Helix 13
AB4
B
272 287Right-handed alpha
Helix 14
AB5
C
162 185Right-handed alpha
Helix 15
AB6
D
13 26Right-handed alpha
Helix 16
AB7
D
51 65Right-handed alpha
Helix 17
AB8
D
70 76Right-handed alpha
Helix 18
AB9
D
83 96Right-handed alpha
Helix 19
AC1
D
100 104Right-handed 310
Helix 20
AC2
D
109 128Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9U9K. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
365 369parallel
Strand 3
A
351 356parallel
Strand 4
A
205 208parallel
Strand 5
A
248 253parallel
Strand 6
A
299 306anti-parallel
Strand 7
A
271 280anti-parallel
Strand 8
A
323 326parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 73first strand
Strand 2
B
317 319parallel
Strand 3
B
303 305parallel
Strand 4
B
93 96parallel
Strand 5
B
128 132parallel
Strand 6
B
236 240anti-parallel
Strand 7
B
151 162anti-parallel
Strand 8
B
258 263parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il