Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9U9R entry

There are 5 chains in PDB entry 9U9R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 1VAL 566
E
 GLU 51SER 612
R
 MET 18ASN 179
M
 MET 1GLN 135
S
 MET 1ILE 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 9U9R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
1 15Right-handed alpha
Helix 2
AA2
B
27 29Right-handed 310
Helix 3
AA3
B
30 40Right-handed alpha
Helix 4
AA4
B
52 57Right-handed alpha
Helix 5
AA5
B
62 75Right-handed alpha
Helix 6
AA6
B
83 91Right-handed alpha
Helix 7
AA7
B
98 112Right-handed alpha
Helix 8
AA8
B
122 128Right-handed alpha
Helix 9
AA9
B
134 142Right-handed alpha
Helix 10
AB1
B
143 145Right-handed 310
Helix 11
AB2
B
160 167Right-handed alpha
Helix 12
AB3
B
172 188Right-handed alpha
Helix 13
AB4
B
196 206Right-handed alpha
Helix 14
AB5
B
212 221Right-handed alpha
Helix 15
AB6
B
229 242Right-handed alpha
Helix 16
AB7
B
248 263Right-handed alpha
Helix 17
AB8
B
266 277Right-handed alpha
Helix 18
AB9
B
277 286Right-handed alpha
Helix 19
AC1
B
289 305Right-handed alpha
Helix 20
AC2
B
314 319Right-handed alpha
Helix 21
AC3
B
325 339Right-handed alpha
Helix 22
AC4
B
345 357Right-handed alpha
Helix 23
AC5
B
360 378Right-handed alpha
Helix 24
AC6
B
381 385Right-handed 310
Helix 25
AC7
B
386 393Right-handed alpha
Helix 26
AC8
B
394 398Right-handed 310
Helix 27
AC9
B
400 410Right-handed alpha
Helix 28
AD1
B
412 414Right-handed 310
Helix 29
AD2
B
415 421Right-handed alpha
Helix 30
AD3
B
422 426Right-handed 310
Helix 31
AD4
B
432 444Right-handed alpha
Helix 32
AD5
B
453 463Right-handed alpha
Helix 33
AD6
B
469 485Right-handed alpha
Helix 34
AD7
B
486 487Right-handed 310
Helix 35
AD8
B
489 489Right-handed 310
Helix 36
AD9
B
490 504Right-handed alpha
Helix 37
AE1
B
511 523Right-handed alpha
Helix 38
AE2
B
527 531Right-handed alpha
Helix 39
AE3
B
552 556Right-handed 310
Helix 40
AE4
E
78 83Right-handed alpha
Helix 41
AE5
E
84 87Right-handed 310
Helix 42
AE6
E
94 100Right-handed 310
Helix 43
AE7
E
101 106Right-handed alpha
Helix 44
AE8
E
112 124Right-handed alpha
Helix 45
AE9
E
131 145Right-handed alpha
Helix 46
AF1
E
148 158Right-handed alpha
Helix 47
AF2
E
162 166Right-handed 310
Helix 48
AF3
E
168 176Right-handed alpha
Helix 49
AF4
E
185 198Right-handed alpha
Helix 50
AF5
E
207 212Right-handed alpha
Helix 51
AF6
E
220 229Right-handed alpha
Helix 52
AF7
E
245 253Right-handed alpha
Helix 53
AF8
E
271 285Right-handed alpha
Helix 54
AF9
E
291 294Right-handed 310
Helix 55
AG1
E
295 300Right-handed alpha
Helix 56
AG2
E
312 322Right-handed alpha
Helix 57
AG3
E
332 342Right-handed alpha
Helix 58
AG4
E
351 367Right-handed alpha
Helix 59
AG5
E
368 373Right-handed 310
Helix 60
AG6
E
376 382Right-handed alpha
Helix 61
AG7
E
388 399Right-handed alpha
Helix 62
AG8
E
405 420Right-handed alpha
Helix 63
AG9
E
423 440Right-handed alpha
Helix 64
AH1
E
444 459Right-handed alpha
Helix 65
AH2
E
464 477Right-handed alpha
Helix 66
AH3
E
484 501Right-handed alpha
Helix 67
AH4
E
507 522Right-handed alpha
Helix 68
AH5
E
523 525Right-handed 310
Helix 69
AH6
E
531 542Right-handed alpha
Helix 70
AH7
E
547 562Right-handed alpha
Helix 71
AH8
E
563 565Right-handed 310
Helix 72
AH9
E
569 575Right-handed alpha
Helix 73
AI1
E
584 598Right-handed alpha
Helix 74
AI2
E
601 607Right-handed alpha
Helix 75
AI3
R
29 39Right-handed alpha
Helix 76
AI4
R
74 82Right-handed 310
Helix 77
AI5
R
99 113Right-handed alpha
Helix 78
AI6
R
135 144Right-handed alpha
Helix 79
AI7
R
165 176Right-handed alpha
Helix 80
AI8
M
27 38Right-handed alpha
Helix 81
AI9
M
75 94Right-handed alpha
Helix 82
AJ1
M
98 103Right-handed alpha
Helix 83
AJ2
M
105 117Right-handed alpha
Helix 84
AJ3
M
118 121Right-handed 310
Helix 85
AJ4
M
126 134Right-handed alpha
Helix 86
AJ5
S
25 39Right-handed alpha
Helix 87
AJ6
S
76 93Right-handed alpha
Helix 88
AJ7
S
108 118Right-handed alpha
Helix 89
AJ8
S
127 132Right-handed alpha
Helix 90
AJ9
S
133 137Right-handed 310
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There are 4 sheets in PDB entry 9U9R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
51 58first strand
Strand 2
R
61 68anti-parallel
Strand 3
R
19 24parallel
Strand 4
R
87 93parallel
Strand 5
R
120 126parallel
Strand 6
R
153 154parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
14 19first strand
Strand 2
M
4 8anti-parallel
Strand 3
M
64 70anti-parallel
Strand 4
M
55 55anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
14 19first strand
Strand 2
M
4 8anti-parallel
Strand 3
M
64 70anti-parallel
Strand 4
M
58 61anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
S
16 19first strand
Strand 2
S
2 8anti-parallel
Strand 3
S
66 71anti-parallel
Strand 4
S
56 61anti-parallel
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