Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9U9V entry

There are 5 chains in PDB entry 9U9V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 9	LEU 394
B	SER 13	ASN 351
C	SER 8	LYS 64
N	GLN 1	SER 128
R	GLU 30	LEU 340

There are 30 helices in PDB entry 9U9V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	39	Right-handed alpha
Helix 2	AA2	A	54	59	Right-handed alpha
Helix 3	AA3	A	233	239	Right-handed 310
Helix 4	AA4	A	264	278	Right-handed alpha
Helix 5	AA5	A	293	303	Right-handed alpha
Helix 6	AA6	A	307	311	Right-handed 310
Helix 7	AA7	A	312	318	Right-handed 310
Helix 8	AA8	A	331	352	Right-handed alpha
Helix 9	AA9	A	369	391	Right-handed alpha
Helix 10	AB1	B	16	36	Right-handed alpha
Helix 11	AB2	B	40	45	Right-handed alpha
Helix 12	AB3	B	46	48	Right-handed 310
Helix 13	AB4	C	9	24	Right-handed alpha
Helix 14	AB5	C	29	44	Right-handed alpha
Helix 15	AB6	N	28	32	Right-handed 310
Helix 16	AB7	N	87	91	Right-handed 310
Helix 17	AB8	R	31	61	Right-handed alpha
Helix 18	AB9	R	66	86	Right-handed alpha
Helix 19	AC1	R	86	97	Right-handed alpha
Helix 20	AC2	R	102	137	Right-handed alpha
Helix 21	AC3	R	137	145	Right-handed alpha
Helix 22	AC4	R	146	171	Right-handed alpha
Helix 23	AC5	R	178	187	Right-handed alpha
Helix 24	AC6	R	201	208	Right-handed alpha
Helix 25	AC7	R	208	238	Right-handed alpha
Helix 26	AC8	R	269	299	Right-handed alpha
Helix 27	AC9	R	304	315	Right-handed alpha
Helix 28	AD1	R	316	321	Right-handed 310
Helix 29	AD2	R	322	327	Right-handed alpha
Helix 30	AD3	R	329	339	Right-handed alpha

There are 10 sheets in PDB entry 9U9V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	218	223	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	62	first strand
Strand 2	B	347	351	anti-parallel
Strand 3	B	338	342	anti-parallel
Strand 4	B	326	331	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	99	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	122	127	anti-parallel
Strand 3	B	132	136	anti-parallel
Strand 4	B	145	150	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	163	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	176	181	anti-parallel
Strand 4	B	187	192	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	203	first strand
Strand 2	B	209	214	anti-parallel
Strand 3	B	219	223	anti-parallel
Strand 4	B	229	233	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	245	first strand
Strand 2	B	251	256	anti-parallel
Strand 3	B	261	265	anti-parallel
Strand 4	B	270	275	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	289	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	6	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9U9V

Analysis of interatomic Contacts of Structural Units in PDB entry:
9U9V