Analysis of interatomic Contacts of Structural Units in PDB entry:
9UA1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UA1 entry

There are 4 chains in PDB entry 9UA1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 28LEU 275
B
 ALA 28GLU 277
C
 PHE 4GLN 257
D
 SER 20ALA 275
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9UA1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 48Right-handed alpha
Helix 2
AA2
A
54 61Right-handed alpha
Helix 3
AA3
A
81 114Right-handed alpha
Helix 4
AA4
A
114 129Right-handed alpha
Helix 5
AA5
A
132 134Right-handed 310
Helix 6
AA6
A
135 144Right-handed alpha
Helix 7
AA7
A
147 173Right-handed alpha
Helix 8
AA8
A
175 185Right-handed alpha
Helix 9
AA9
A
188 196Right-handed alpha
Helix 10
AB1
A
196 219Right-handed alpha
Helix 11
AB2
A
219 226Right-handed alpha
Helix 12
AB3
A
234 243Right-handed alpha
Helix 13
AB4
A
245 275Right-handed alpha
Helix 14
AB5
B
29 47Right-handed alpha
Helix 15
AB6
B
54 60Right-handed alpha
Helix 16
AB7
B
63 70Right-handed alpha
Helix 17
AB8
B
81 114Right-handed alpha
Helix 18
AB9
B
114 129Right-handed alpha
Helix 19
AC1
B
135 144Right-handed alpha
Helix 20
AC2
B
148 173Right-handed alpha
Helix 21
AC3
B
175 186Right-handed alpha
Helix 22
AC4
B
188 196Right-handed alpha
Helix 23
AC5
B
196 219Right-handed alpha
Helix 24
AC6
B
219 224Right-handed alpha
Helix 25
AC7
B
234 243Right-handed alpha
Helix 26
AC8
B
245 275Right-handed alpha
Helix 27
AC9
C
47 56Right-handed alpha
Helix 28
AD1
C
94 107Right-handed alpha
Helix 29
AD2
C
111 127Right-handed alpha
Helix 30
AD3
C
135 139Right-handed 310
Helix 31
AD4
C
140 155Right-handed alpha
Helix 32
AD5
C
170 188Right-handed alpha
Helix 33
AD6
C
198 206Right-handed alpha
Helix 34
AD7
C
233 240Right-handed alpha
Helix 35
AD8
C
240 257Right-handed alpha
Helix 36
AD9
D
63 73Right-handed alpha
Helix 37
AE1
D
110 123Right-handed alpha
Helix 38
AE2
D
127 142Right-handed alpha
Helix 39
AE3
D
144 148Right-handed 310
Helix 40
AE4
D
156 172Right-handed alpha
Helix 41
AE5
D
186 204Right-handed alpha
Helix 42
AE6
D
214 222Right-handed alpha
Helix 43
AE7
D
261 273Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 9UA1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
5 10anti-parallel
Strand 3
C
65 68anti-parallel
Strand 4
C
71 72anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
22 23anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 83first strand
Strand 2
C
159 163parallel
Strand 3
C
191 195parallel
Strand 4
C
37 42parallel
Strand 5
C
208 212parallel
Strand 6
C
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 48first strand
Strand 2
D
22 32anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
87 88anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 99first strand
Strand 2
D
175 179parallel
Strand 3
D
207 211parallel
Strand 4
D
53 57parallel
Strand 5
D
224 227parallel
Strand 6
D
240 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il