Analysis of interatomic Contacts of Structural Units in PDB entry:
9UA8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UA8 entry

There are 12 chains in PDB entry 9UA8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 277	VAL 581
F	THR 391	ASP 392
F	ARG 395	ARG 395
B	SER 277	VAL 581
C	ASP 392	ASP 392
C	ARG 395	ARG 395
D	SER 277	VAL 581
E	THR 391	ASP 392
E	ARG 395	LYS 396
G	SER 277	VAL 581
H	THR 391	ASP 392
H	ARG 395	ARG 395

There are 34 helices in PDB entry 9UA8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	288	313	Right-handed alpha
Helix 2	AA2	A	327	331	Right-handed 310
Helix 3	AA3	A	379	381	Right-handed 310
Helix 4	AA4	A	382	393	Right-handed alpha
Helix 5	AA5	A	476	496	Right-handed alpha
Helix 6	AA6	A	519	539	Right-handed alpha
Helix 7	AA7	A	542	552	Right-handed alpha
Helix 8	AA8	A	560	578	Right-handed alpha
Helix 9	AA9	B	288	313	Right-handed alpha
Helix 10	AB1	B	319	324	Right-handed alpha
Helix 11	AB2	B	327	331	Right-handed 310
Helix 12	AB3	B	379	381	Right-handed 310
Helix 13	AB4	B	382	393	Right-handed alpha
Helix 14	AB5	B	476	497	Right-handed alpha
Helix 15	AB6	B	519	539	Right-handed alpha
Helix 16	AB7	B	542	552	Right-handed alpha
Helix 17	AB8	B	560	578	Right-handed alpha
Helix 18	AB9	D	288	313	Right-handed alpha
Helix 19	AC1	D	327	331	Right-handed 310
Helix 20	AC2	D	379	381	Right-handed 310
Helix 21	AC3	D	382	393	Right-handed alpha
Helix 22	AC4	D	476	497	Right-handed alpha
Helix 23	AC5	D	519	539	Right-handed alpha
Helix 24	AC6	D	542	551	Right-handed alpha
Helix 25	AC7	D	560	578	Right-handed alpha
Helix 26	AC8	G	288	312	Right-handed alpha
Helix 27	AC9	G	319	324	Right-handed alpha
Helix 28	AD1	G	327	331	Right-handed 310
Helix 29	AD2	G	379	381	Right-handed 310
Helix 30	AD3	G	382	393	Right-handed alpha
Helix 31	AD4	G	476	497	Right-handed alpha
Helix 32	AD5	G	519	539	Right-handed alpha
Helix 33	AD6	G	542	552	Right-handed alpha
Helix 34	AD7	G	560	578	Right-handed alpha

There are 11 sheets in PDB entry 9UA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	540	541	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	A	357	365	anti-parallel
Strand 3	A	368	375	anti-parallel
Strand 4	A	511	514	parallel
Strand 5	A	397	400	parallel
Strand 6	A	456	465	parallel
Strand 7	A	442	451	anti-parallel
Strand 8	A	429	438	anti-parallel
Strand 9	A	423	426	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	409	410	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	286	287	first strand
Strand 2	B	540	541	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	360	365	first strand
Strand 2	B	368	375	anti-parallel
Strand 3	B	511	514	parallel
Strand 4	B	397	400	parallel
Strand 5	B	456	465	parallel
Strand 6	B	442	451	anti-parallel
Strand 7	B	429	438	anti-parallel
Strand 8	B	423	426	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	286	287	first strand
Strand 2	D	540	541	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	345	first strand
Strand 2	D	357	365	anti-parallel
Strand 3	D	368	375	anti-parallel
Strand 4	D	511	514	parallel
Strand 5	D	397	400	parallel
Strand 6	D	456	465	parallel
Strand 7	D	442	451	anti-parallel
Strand 8	D	429	438	anti-parallel
Strand 9	D	423	426	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	405	406	first strand
Strand 2	D	409	410	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	286	287	first strand
Strand 2	G	540	541	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	343	345	first strand
Strand 2	G	357	365	anti-parallel
Strand 3	G	368	375	anti-parallel
Strand 4	G	511	514	parallel
Strand 5	G	397	400	parallel
Strand 6	G	456	465	parallel
Strand 7	G	442	451	anti-parallel
Strand 8	G	429	438	anti-parallel
Strand 9	G	423	426	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	405	406	first strand
Strand 2	G	409	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UA8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UA8