Analysis of interatomic Contacts of Structural Units in PDB entry:
9UA9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UA9 entry

There are 9 chains in PDB entry 9UA9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	PRO 2	LEU 110
H	GLN 1	SER 125
A	ILE 27	GLU 476
C	ILE 27	GLU 476
B	ILE 27	GLU 476
G	GLN 1	SER 125
I	GLN 1	SER 125
E	PRO 2	LEU 110
D	PRO 2	LEU 110

There are 66 helices in PDB entry 9UA9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	80	84	Right-handed 310
Helix 2	AA2	H	28	32	Right-handed 310
Helix 3	AA3	H	64	66	Right-handed 310
Helix 4	AA4	H	87	91	Right-handed 310
Helix 5	AA5	A	29	35	Right-handed alpha
Helix 6	AA6	A	65	72	Right-handed 310
Helix 7	AA7	A	74	99	Right-handed alpha
Helix 8	AA8	A	117	121	Right-handed alpha
Helix 9	AA9	A	125	146	Right-handed alpha
Helix 10	AB1	A	147	153	Right-handed alpha
Helix 11	AB2	A	175	182	Right-handed alpha
Helix 12	AB3	A	183	187	Right-handed 310
Helix 13	AB4	A	191	215	Right-handed alpha
Helix 14	AB5	A	228	232	Right-handed alpha
Helix 15	AB6	A	233	236	Right-handed 310
Helix 16	AB7	A	238	247	Right-handed alpha
Helix 17	AB8	A	252	259	Right-handed alpha
Helix 18	AB9	A	328	331	Right-handed 310
Helix 19	AC1	A	349	357	Right-handed alpha
Helix 20	AC2	A	359	363	Right-handed 310
Helix 21	AC3	A	437	441	Right-handed 310
Helix 22	AC4	A	452	476	Right-handed alpha
Helix 23	AC5	C	29	35	Right-handed alpha
Helix 24	AC6	C	65	72	Right-handed 310
Helix 25	AC7	C	74	99	Right-handed alpha
Helix 26	AC8	C	117	121	Right-handed alpha
Helix 27	AC9	C	125	146	Right-handed alpha
Helix 28	AD1	C	147	153	Right-handed alpha
Helix 29	AD2	C	175	182	Right-handed alpha
Helix 30	AD3	C	183	187	Right-handed 310
Helix 31	AD4	C	191	215	Right-handed alpha
Helix 32	AD5	C	227	232	Right-handed alpha
Helix 33	AD6	C	233	236	Right-handed 310
Helix 34	AD7	C	238	247	Right-handed alpha
Helix 35	AD8	C	252	259	Right-handed alpha
Helix 36	AD9	C	328	331	Right-handed 310
Helix 37	AE1	C	349	357	Right-handed alpha
Helix 38	AE2	C	359	363	Right-handed 310
Helix 39	AE3	C	437	441	Right-handed 310
Helix 40	AE4	C	452	476	Right-handed alpha
Helix 41	AE5	B	29	35	Right-handed alpha
Helix 42	AE6	B	65	72	Right-handed 310
Helix 43	AE7	B	74	99	Right-handed alpha
Helix 44	AE8	B	117	121	Right-handed alpha
Helix 45	AE9	B	125	146	Right-handed alpha
Helix 46	AF1	B	147	153	Right-handed alpha
Helix 47	AF2	B	175	182	Right-handed alpha
Helix 48	AF3	B	183	187	Right-handed 310
Helix 49	AF4	B	191	215	Right-handed alpha
Helix 50	AF5	B	228	232	Right-handed alpha
Helix 51	AF6	B	233	236	Right-handed 310
Helix 52	AF7	B	238	247	Right-handed alpha
Helix 53	AF8	B	252	259	Right-handed alpha
Helix 54	AF9	B	328	331	Right-handed 310
Helix 55	AG1	B	349	357	Right-handed alpha
Helix 56	AG2	B	359	363	Right-handed 310
Helix 57	AG3	B	437	441	Right-handed 310
Helix 58	AG4	B	452	476	Right-handed alpha
Helix 59	AG5	G	28	32	Right-handed 310
Helix 60	AG6	G	64	66	Right-handed 310
Helix 61	AG7	G	87	91	Right-handed 310
Helix 62	AG8	I	28	32	Right-handed 310
Helix 63	AG9	I	64	66	Right-handed 310
Helix 64	AH1	I	87	91	Right-handed 310
Helix 65	AH2	E	80	84	Right-handed 310
Helix 66	AH3	D	80	84	Right-handed 310

There are 36 sheets in PDB entry 9UA9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	105	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	46	50	anti-parallel
Strand 6	F	54	55	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	9	13	first strand
Strand 2	F	105	110	parallel
Strand 3	F	86	93	anti-parallel
Strand 4	F	98	101	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	18	23	first strand
Strand 2	F	71	76	anti-parallel
Strand 3	F	63	68	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	60	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	115	116	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	103	first strand
Strand 2	H	109	111	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	38	60	parallel
Strand 4	A	337	340	parallel
Strand 5	A	332	333	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	275	287	anti-parallel
Strand 4	A	38	60	anti-parallel
Strand 5	A	291	298	anti-parallel
Strand 6	A	315	319	anti-parallel
Strand 7	A	322	326	anti-parallel
Strand 8	A	345	346	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	114	116	anti-parallel
Strand 3	B	425	428	parallel
Strand 4	B	419	422	anti-parallel
Strand 5	B	392	394	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	B	376	379	anti-parallel
Strand 3	B	382	385	anti-parallel
Strand 4	B	410	412	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	C	123	124	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	C	114	116	parallel
Strand 5	C	101	102	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	168	173	anti-parallel
Strand 3	C	38	60	parallel
Strand 4	C	337	340	parallel
Strand 5	C	332	333	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	270	first strand
Strand 2	C	275	287	anti-parallel
Strand 3	C	38	60	anti-parallel
Strand 4	C	291	298	anti-parallel
Strand 5	C	315	319	anti-parallel
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	307	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	382	385	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	419	422	anti-parallel
Strand 3	C	425	428	anti-parallel
Strand 4	B	114	116	parallel
Strand 5	B	101	102	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	162	first strand
Strand 2	B	168	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	337	340	parallel
Strand 5	B	332	333	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	263	270	anti-parallel
Strand 3	B	275	287	anti-parallel
Strand 4	B	38	60	anti-parallel
Strand 5	B	291	298	anti-parallel
Strand 6	B	315	319	anti-parallel
Strand 7	B	322	326	anti-parallel
Strand 8	B	345	346	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	310	anti-parallel
Strand 3	B	365	367	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	18	25	anti-parallel
Strand 3	G	78	83	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	34	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	57	60	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	120	124	parallel
Strand 3	G	92	98	anti-parallel
Strand 4	G	115	116	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	103	first strand
Strand 2	G	109	111	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	120	124	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	11	12	first strand
Strand 2	I	120	124	parallel
Strand 3	I	92	98	anti-parallel
Strand 4	I	115	116	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	101	103	first strand
Strand 2	I	109	111	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	105	110	parallel
Strand 3	E	86	93	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	50	anti-parallel
Strand 6	E	54	55	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	105	110	parallel
Strand 3	E	86	93	anti-parallel
Strand 4	E	98	101	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	18	23	first strand
Strand 2	E	71	76	anti-parallel
Strand 3	E	63	68	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	105	110	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	46	50	anti-parallel
Strand 6	D	54	55	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	105	110	parallel
Strand 3	D	86	93	anti-parallel
Strand 4	D	98	101	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	23	first strand
Strand 2	D	71	76	anti-parallel
Strand 3	D	63	68	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UA9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UA9