Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UAF entry

There are 4 chains in PDB entry 9UAF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 8	LEU 295
D	MET 8	LEU 295
A	ARG -3	GLY 299
B	PRO 10	ASN 296

There are 43 helices in PDB entry 9UAF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	20	31	Right-handed alpha
Helix 2	AA2	C	41	58	Right-handed alpha
Helix 3	AA3	C	82	87	Right-handed alpha
Helix 4	AA4	C	87	92	Right-handed alpha
Helix 5	AA5	C	97	108	Right-handed alpha
Helix 6	AA6	C	140	146	Right-handed 310
Helix 7	AA7	C	176	180	Right-handed 310
Helix 8	AA8	C	187	191	Right-handed 310
Helix 9	AA9	C	245	250	Right-handed alpha
Helix 10	AB1	C	253	260	Right-handed alpha
Helix 11	AB2	C	282	288	Right-handed alpha
Helix 12	AB3	D	20	32	Right-handed alpha
Helix 13	AB4	D	41	58	Right-handed alpha
Helix 14	AB5	D	82	87	Right-handed alpha
Helix 15	AB6	D	87	92	Right-handed alpha
Helix 16	AB7	D	97	108	Right-handed alpha
Helix 17	AB8	D	140	146	Right-handed 310
Helix 18	AB9	D	176	180	Right-handed 310
Helix 19	AC1	D	245	250	Right-handed alpha
Helix 20	AC2	D	253	260	Right-handed alpha
Helix 21	AC3	D	282	287	Right-handed alpha
Helix 22	AC4	A	20	32	Right-handed alpha
Helix 23	AC5	A	41	58	Right-handed alpha
Helix 24	AC6	A	82	87	Right-handed alpha
Helix 25	AC7	A	87	93	Right-handed alpha
Helix 26	AC8	A	97	108	Right-handed alpha
Helix 27	AC9	A	140	146	Right-handed 310
Helix 28	AD1	A	176	180	Right-handed 310
Helix 29	AD2	A	187	191	Right-handed 310
Helix 30	AD3	A	245	250	Right-handed alpha
Helix 31	AD4	A	253	260	Right-handed alpha
Helix 32	AD5	A	282	287	Right-handed alpha
Helix 33	AD6	B	20	32	Right-handed alpha
Helix 34	AD7	B	41	58	Right-handed alpha
Helix 35	AD8	B	82	87	Right-handed alpha
Helix 36	AD9	B	87	92	Right-handed alpha
Helix 37	AE1	B	97	108	Right-handed alpha
Helix 38	AE2	B	140	146	Right-handed 310
Helix 39	AE3	B	176	180	Right-handed 310
Helix 40	AE4	B	187	191	Right-handed 310
Helix 41	AE5	B	245	250	Right-handed alpha
Helix 42	AE6	B	253	260	Right-handed alpha
Helix 43	AE7	B	282	287	Right-handed alpha

There are 8 sheets in PDB entry 9UAF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	33	37	parallel
Strand 3	C	201	204	anti-parallel
Strand 4	C	154	160	anti-parallel
Strand 5	C	223	232	anti-parallel
Strand 6	C	114	124	anti-parallel
Strand 7	C	77	80	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	172	173	anti-parallel
Strand 3	C	210	211	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	33	37	parallel
Strand 3	D	201	205	anti-parallel
Strand 4	D	154	160	anti-parallel
Strand 5	D	223	232	anti-parallel
Strand 6	D	114	124	anti-parallel
Strand 7	D	77	80	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	193	first strand
Strand 2	D	172	173	anti-parallel
Strand 3	D	210	211	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	33	37	parallel
Strand 3	A	201	204	anti-parallel
Strand 4	A	154	160	anti-parallel
Strand 5	A	223	232	anti-parallel
Strand 6	A	114	124	anti-parallel
Strand 7	A	77	80	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	172	173	anti-parallel
Strand 3	A	210	211	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	33	37	parallel
Strand 3	B	201	204	anti-parallel
Strand 4	B	154	160	anti-parallel
Strand 5	B	223	232	anti-parallel
Strand 6	B	114	124	anti-parallel
Strand 7	B	77	80	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	193	first strand
Strand 2	B	172	173	anti-parallel
Strand 3	B	210	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UAF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAF