Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UAJ entry

There are 10 chains in PDB entry 9UAJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 21	ALA 204
B	ASN 21	SER 199
C	PRO 20	ILE 200
D	GLN 24	ASN 203
E	LEU 26	LYS 210
F	SER 21	ALA 204
G	LEU 26	LYS 210
H	GLN 24	ARG 202
I	PRO 20	ILE 200
J	ASN 21	SER 199

There are 69 helices in PDB entry 9UAJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	44	Right-handed alpha
Helix 2	AA2	A	70	77	Right-handed alpha
Helix 3	AA3	A	92	99	Right-handed alpha
Helix 4	AA4	A	127	149	Right-handed alpha
Helix 5	AA5	A	172	183	Right-handed alpha
Helix 6	AA6	A	184	189	Right-handed 310
Helix 7	AA7	B	33	40	Right-handed alpha
Helix 8	AA8	B	65	73	Right-handed alpha
Helix 9	AA9	B	89	96	Right-handed alpha
Helix 10	AB1	B	123	139	Right-handed alpha
Helix 11	AB2	B	141	145	Right-handed 310
Helix 12	AB3	B	167	169	Right-handed 310
Helix 13	AB4	B	170	177	Right-handed alpha
Helix 14	AB5	C	37	44	Right-handed alpha
Helix 15	AB6	C	67	74	Right-handed alpha
Helix 16	AB7	C	91	98	Right-handed alpha
Helix 17	AB8	C	125	144	Right-handed alpha
Helix 18	AB9	C	172	179	Right-handed alpha
Helix 19	AC1	D	40	46	Right-handed 310
Helix 20	AC2	D	70	74	Right-handed alpha
Helix 21	AC3	D	90	97	Right-handed alpha
Helix 22	AC4	D	125	144	Right-handed alpha
Helix 23	AC5	D	169	183	Right-handed 310
Helix 24	AC6	D	185	187	Right-handed 310
Helix 25	AC7	E	41	48	Right-handed alpha
Helix 26	AC8	E	73	80	Right-handed alpha
Helix 27	AC9	E	81	83	Right-handed 310
Helix 28	AD1	E	97	105	Right-handed alpha
Helix 29	AD2	E	133	152	Right-handed alpha
Helix 30	AD3	E	153	155	Right-handed 310
Helix 31	AD4	E	177	179	Right-handed 310
Helix 32	AD5	E	180	186	Right-handed alpha
Helix 33	AD6	E	187	193	Right-handed 310
Helix 34	AD7	E	194	196	Right-handed 310
Helix 35	AD8	F	36	44	Right-handed alpha
Helix 36	AD9	F	70	76	Right-handed alpha
Helix 37	AE1	F	92	99	Right-handed alpha
Helix 38	AE2	F	127	147	Right-handed alpha
Helix 39	AE3	F	172	183	Right-handed alpha
Helix 40	AE4	F	184	189	Right-handed 310
Helix 41	AE5	G	41	48	Right-handed alpha
Helix 42	AE6	G	73	80	Right-handed alpha
Helix 43	AE7	G	81	83	Right-handed 310
Helix 44	AE8	G	97	104	Right-handed alpha
Helix 45	AE9	G	133	152	Right-handed alpha
Helix 46	AF1	G	153	155	Right-handed 310
Helix 47	AF2	G	180	186	Right-handed alpha
Helix 48	AF3	G	187	193	Right-handed 310
Helix 49	AF4	G	194	196	Right-handed 310
Helix 50	AF5	H	40	46	Right-handed 310
Helix 51	AF6	H	70	74	Right-handed alpha
Helix 52	AF7	H	90	97	Right-handed alpha
Helix 53	AF8	H	125	144	Right-handed alpha
Helix 54	AF9	H	169	184	Right-handed 310
Helix 55	AG1	H	185	187	Right-handed 310
Helix 56	AG2	I	37	43	Right-handed alpha
Helix 57	AG3	I	67	74	Right-handed alpha
Helix 58	AG4	I	75	77	Right-handed 310
Helix 59	AG5	I	91	98	Right-handed alpha
Helix 60	AG6	I	125	144	Right-handed alpha
Helix 61	AG7	I	172	178	Right-handed alpha
Helix 62	AG8	J	33	41	Right-handed alpha
Helix 63	AG9	J	65	73	Right-handed alpha
Helix 64	AH1	J	89	96	Right-handed alpha
Helix 65	AH2	J	123	139	Right-handed alpha
Helix 66	AH3	J	140	145	Right-handed 310
Helix 67	AH4	J	167	169	Right-handed 310
Helix 68	AH5	J	170	177	Right-handed alpha
Helix 69	AH6	J	178	183	Right-handed 310

There are 11 sheets in PDB entry 9UAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	30	first strand
Strand 2	A	60	66	anti-parallel
Strand 3	A	49	55	anti-parallel
Strand 4	A	194	203	anti-parallel
Strand 5	A	114	121	anti-parallel
Strand 6	A	163	169	anti-parallel
Strand 7	A	151	156	anti-parallel
Strand 8	A	83	91	anti-parallel
Strand 9	A	23	30	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	24	29	first strand
Strand 2	B	58	63	anti-parallel
Strand 3	B	46	52	anti-parallel
Strand 4	B	188	197	anti-parallel
Strand 5	B	110	117	anti-parallel
Strand 6	B	159	165	anti-parallel
Strand 7	B	146	152	anti-parallel
Strand 8	B	81	88	anti-parallel
Strand 9	B	24	29	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	C	78	79	parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	22	29	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	48	54	anti-parallel
Strand 4	C	190	199	anti-parallel
Strand 5	C	111	119	anti-parallel
Strand 6	C	161	167	anti-parallel
Strand 7	C	149	154	anti-parallel
Strand 8	C	82	90	anti-parallel
Strand 9	C	22	29	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	32	first strand
Strand 2	D	63	69	anti-parallel
Strand 3	D	54	58	anti-parallel
Strand 4	D	189	201	anti-parallel
Strand 5	D	113	119	anti-parallel
Strand 6	D	162	165	anti-parallel
Strand 7	D	150	154	anti-parallel
Strand 8	D	81	89	anti-parallel
Strand 9	D	26	32	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	36	first strand
Strand 2	E	65	71	anti-parallel
Strand 3	E	56	60	anti-parallel
Strand 4	E	198	207	anti-parallel
Strand 5	E	120	127	anti-parallel
Strand 6	E	169	175	anti-parallel
Strand 7	E	156	162	anti-parallel
Strand 8	E	88	96	anti-parallel
Strand 9	E	29	36	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	30	first strand
Strand 2	F	60	66	anti-parallel
Strand 3	F	49	55	anti-parallel
Strand 4	F	194	203	anti-parallel
Strand 5	F	114	121	anti-parallel
Strand 6	F	163	169	anti-parallel
Strand 7	F	151	156	anti-parallel
Strand 8	F	83	91	anti-parallel
Strand 9	F	23	30	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	36	first strand
Strand 2	G	65	71	anti-parallel
Strand 3	G	54	60	anti-parallel
Strand 4	G	198	207	anti-parallel
Strand 5	G	120	127	anti-parallel
Strand 6	G	169	175	anti-parallel
Strand 7	G	156	162	anti-parallel
Strand 8	G	88	96	anti-parallel
Strand 9	G	29	36	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	32	first strand
Strand 2	H	63	69	anti-parallel
Strand 3	H	54	58	anti-parallel
Strand 4	H	189	201	anti-parallel
Strand 5	H	113	119	anti-parallel
Strand 6	H	162	166	anti-parallel
Strand 7	H	149	154	anti-parallel
Strand 8	H	81	89	anti-parallel
Strand 9	H	26	32	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	22	29	first strand
Strand 2	I	60	65	anti-parallel
Strand 3	I	48	54	anti-parallel
Strand 4	I	190	199	anti-parallel
Strand 5	I	112	119	anti-parallel
Strand 6	I	161	167	anti-parallel
Strand 7	I	149	154	anti-parallel
Strand 8	I	82	90	anti-parallel
Strand 9	I	22	29	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	24	30	first strand
Strand 2	J	57	63	anti-parallel
Strand 3	J	46	52	anti-parallel
Strand 4	J	188	198	anti-parallel
Strand 5	J	110	117	anti-parallel
Strand 6	J	159	165	anti-parallel
Strand 7	J	146	152	anti-parallel
Strand 8	J	80	88	anti-parallel
Strand 9	J	24	30	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UAJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAJ