Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9UAK entry

There is 1 chain in PDB entry 9UAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 276ALA 665
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9UAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
288 290Right-handed 310
Helix 2
AA2
A
291 300Right-handed alpha
Helix 3
AA3
A
301 306Right-handed alpha
Helix 4
AA4
A
318 329Right-handed alpha
Helix 5
AA5
A
339 346Right-handed alpha
Helix 6
AA6
A
372 378Right-handed alpha
Helix 7
AA7
A
406 419Right-handed alpha
Helix 8
AA8
A
433 435Right-handed 310
Helix 9
AA9
A
436 443Right-handed alpha
Helix 10
AB1
A
454 462Right-handed alpha
Helix 11
AB2
A
472 474Right-handed 310
Helix 12
AB3
A
487 493Right-handed alpha
Helix 13
AB4
A
493 513Right-handed alpha
Helix 14
AB5
A
516 526Right-handed alpha
Helix 15
AB6
A
533 537Right-handed 310
Helix 16
AB7
A
570 584Right-handed alpha
Helix 17
AB8
A
592 601Right-handed alpha
Helix 18
AB9
A
602 613Right-handed alpha
Helix 19
AC1
A
637 645Right-handed alpha
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There are 3 sheets in PDB entry 9UAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 315first strand
Strand 2
A
280 285parallel
Strand 3
A
333 336parallel
Strand 4
A
482 486anti-parallel
Strand 5
A
355 360anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 431first strand
Strand 2
A
398 401parallel
Strand 3
A
448 452parallel
Strand 4
A
366 371anti-parallel
Strand 5
A
465 470anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
653 654parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il