Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UAQ entry

There are 12 chains in PDB entry 9UAQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	THR 320
B	LYS 2	THR 320
C	LYS 2	GLU 321
D	GLN 3	LEU 234
E	GLN 3	LEU 234
F	GLN 3	GLU 235
G	GLY 5	LEU 65
G	VAL 69	THR 231
H	GLY 5	LEU 65
H	VAL 69	THR 231
I	GLY 5	LEU 65
I	VAL 69	THR 231

There are 88 helices in PDB entry 9UAQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	24	Right-handed alpha
Helix 2	AA2	A	27	42	Right-handed alpha
Helix 3	AA3	A	43	57	Right-handed alpha
Helix 4	AA4	A	59	72	Right-handed alpha
Helix 5	AA5	A	76	90	Right-handed alpha
Helix 6	AA6	A	93	127	Right-handed alpha
Helix 7	AA7	A	136	151	Right-handed alpha
Helix 8	AA8	A	163	171	Right-handed alpha
Helix 9	AA9	A	172	175	Right-handed 310
Helix 10	AB1	A	188	197	Right-handed alpha
Helix 11	AB2	A	209	220	Right-handed alpha
Helix 12	AB3	A	229	239	Right-handed alpha
Helix 13	AB4	A	248	253	Right-handed alpha
Helix 14	AB5	A	253	261	Right-handed alpha
Helix 15	AB6	A	279	286	Right-handed alpha
Helix 16	AB7	A	294	299	Right-handed alpha
Helix 17	AB8	A	301	319	Right-handed alpha
Helix 18	AB9	B	3	24	Right-handed alpha
Helix 19	AC1	B	27	42	Right-handed alpha
Helix 20	AC2	B	43	57	Right-handed alpha
Helix 21	AC3	B	59	72	Right-handed alpha
Helix 22	AC4	B	76	90	Right-handed alpha
Helix 23	AC5	B	93	125	Right-handed alpha
Helix 24	AC6	B	136	151	Right-handed alpha
Helix 25	AC7	B	163	172	Right-handed alpha
Helix 26	AC8	B	173	175	Right-handed 310
Helix 27	AC9	B	188	199	Right-handed alpha
Helix 28	AD1	B	209	220	Right-handed alpha
Helix 29	AD2	B	229	239	Right-handed alpha
Helix 30	AD3	B	248	253	Right-handed alpha
Helix 31	AD4	B	253	262	Right-handed alpha
Helix 32	AD5	B	279	286	Right-handed alpha
Helix 33	AD6	B	301	320	Right-handed alpha
Helix 34	AD7	C	3	24	Right-handed alpha
Helix 35	AD8	C	27	42	Right-handed alpha
Helix 36	AD9	C	43	57	Right-handed alpha
Helix 37	AE1	C	59	72	Right-handed alpha
Helix 38	AE2	C	76	90	Right-handed alpha
Helix 39	AE3	C	93	127	Right-handed alpha
Helix 40	AE4	C	136	151	Right-handed alpha
Helix 41	AE5	C	163	172	Right-handed alpha
Helix 42	AE6	C	173	175	Right-handed 310
Helix 43	AE7	C	188	198	Right-handed alpha
Helix 44	AE8	C	209	220	Right-handed alpha
Helix 45	AE9	C	229	239	Right-handed alpha
Helix 46	AF1	C	248	253	Right-handed alpha
Helix 47	AF2	C	253	261	Right-handed alpha
Helix 48	AF3	C	279	286	Right-handed alpha
Helix 49	AF4	C	301	320	Right-handed alpha
Helix 50	AF5	D	30	34	Right-handed 310
Helix 51	AF6	D	89	93	Right-handed 310
Helix 52	AF7	D	118	131	Right-handed alpha
Helix 53	AF8	D	136	146	Right-handed alpha
Helix 54	AF9	D	148	163	Right-handed alpha
Helix 55	AG1	D	166	181	Right-handed alpha
Helix 56	AG2	D	182	197	Right-handed alpha
Helix 57	AG3	D	197	212	Right-handed alpha
Helix 58	AG4	D	213	233	Right-handed alpha
Helix 59	AG5	E	30	34	Right-handed 310
Helix 60	AG6	E	89	93	Right-handed 310
Helix 61	AG7	E	118	131	Right-handed alpha
Helix 62	AG8	E	136	146	Right-handed alpha
Helix 63	AG9	E	148	163	Right-handed alpha
Helix 64	AH1	E	166	181	Right-handed alpha
Helix 65	AH2	E	182	197	Right-handed alpha
Helix 66	AH3	E	197	212	Right-handed alpha
Helix 67	AH4	E	213	234	Right-handed alpha
Helix 68	AH5	F	30	34	Right-handed 310
Helix 69	AH6	F	64	67	Right-handed 310
Helix 70	AH7	F	89	93	Right-handed 310
Helix 71	AH8	F	118	131	Right-handed alpha
Helix 72	AH9	F	136	147	Right-handed alpha
Helix 73	AI1	F	148	163	Right-handed alpha
Helix 74	AI2	F	166	181	Right-handed alpha
Helix 75	AI3	F	182	197	Right-handed alpha
Helix 76	AI4	F	197	211	Right-handed alpha
Helix 77	AI5	F	213	234	Right-handed alpha
Helix 78	AI6	G	57	63	Right-handed alpha
Helix 79	AI7	G	69	73	Right-handed 310
Helix 80	AI8	G	76	83	Right-handed 310
Helix 81	AI9	G	157	160	Right-handed 310
Helix 82	AJ1	H	57	63	Right-handed alpha
Helix 83	AJ2	H	69	73	Right-handed 310
Helix 84	AJ3	H	76	83	Right-handed 310
Helix 85	AJ4	H	157	160	Right-handed 310
Helix 86	AJ5	I	57	63	Right-handed alpha
Helix 87	AJ6	I	69	73	Right-handed 310
Helix 88	AJ7	I	76	83	Right-handed 310

There are 20 sheets in PDB entry 9UAQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	184	first strand
Strand 2	A	154	158	parallel
Strand 3	A	128	132	parallel
Strand 4	A	291	293	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	204	first strand
Strand 2	A	222	224	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	243	246	parallel
Strand 3	A	268	271	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	184	first strand
Strand 2	B	154	158	parallel
Strand 3	B	128	132	parallel
Strand 4	B	291	293	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	204	first strand
Strand 2	B	222	224	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	243	246	parallel
Strand 3	B	268	271	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	224	first strand
Strand 2	C	202	204	parallel
Strand 3	C	180	184	parallel
Strand 4	C	154	158	parallel
Strand 5	C	128	132	parallel
Strand 6	C	291	293	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	243	246	parallel
Strand 3	C	268	269	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	20	27	anti-parallel
Strand 3	D	80	85	anti-parallel
Strand 4	D	70	75	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	111	115	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	36	41	anti-parallel
Strand 5	D	48	53	anti-parallel
Strand 6	D	60	62	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	111	115	parallel
Strand 3	D	94	101	anti-parallel
Strand 4	D	105	106	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	9	first strand
Strand 2	E	20	27	anti-parallel
Strand 3	E	80	85	anti-parallel
Strand 4	E	70	75	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	111	115	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	36	41	anti-parallel
Strand 5	E	48	53	anti-parallel
Strand 6	E	60	62	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	111	115	parallel
Strand 3	E	94	101	anti-parallel
Strand 4	E	105	106	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	9	first strand
Strand 2	F	19	27	anti-parallel
Strand 3	F	80	86	anti-parallel
Strand 4	F	70	75	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	111	115	parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	36	41	anti-parallel
Strand 5	F	48	53	anti-parallel
Strand 6	F	60	62	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	13	14	first strand
Strand 2	F	111	115	parallel
Strand 3	F	94	101	anti-parallel
Strand 4	F	105	106	anti-parallel

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There are 12 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	23	first strand
Strand 2	G	26	37	anti-parallel
Strand 3	G	42	49	anti-parallel
Strand 4	G	218	228	anti-parallel
Strand 5	G	200	209	anti-parallel
Strand 6	G	149	156	anti-parallel
Strand 7	G	161	171	anti-parallel
Strand 8	G	177	188	anti-parallel
Strand 9	G	93	101	anti-parallel
Strand 10	G	106	114	anti-parallel
Strand 11	G	120	129	anti-parallel
Strand 12	G	12	23	parallel

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There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	23	first strand
Strand 2	H	26	37	anti-parallel
Strand 3	H	42	49	anti-parallel
Strand 4	H	218	228	anti-parallel
Strand 5	H	200	209	anti-parallel
Strand 6	H	149	156	anti-parallel
Strand 7	H	161	171	anti-parallel
Strand 8	H	177	188	anti-parallel
Strand 9	H	93	101	anti-parallel
Strand 10	H	106	114	anti-parallel
Strand 11	H	120	129	anti-parallel
Strand 12	H	12	23	parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	23	first strand
Strand 2	I	26	37	anti-parallel
Strand 3	I	42	49	anti-parallel
Strand 4	I	218	228	anti-parallel
Strand 5	I	200	209	anti-parallel
Strand 6	I	149	156	anti-parallel
Strand 7	I	161	171	anti-parallel
Strand 8	I	177	188	anti-parallel
Strand 9	I	93	101	anti-parallel
Strand 10	I	106	114	anti-parallel
Strand 11	I	120	129	anti-parallel
Strand 12	I	12	23	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UAQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAQ