Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9UAV entry

There are 8 chains in PDB entry 9UAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ARG 266
B	MET 1	ARG 266
C	GLN 179	GLU 723
D	ALA 175	GLU 723
E	LEU 37	ARG 285
F	LEU 37	LEU 284
G	ALA 349	ALA 351
H	ALA 349	ALA 351

There are 68 helices in PDB entry 9UAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	26	Right-handed alpha
Helix 2	AA2	A	28	39	Right-handed alpha
Helix 3	AA3	A	39	66	Right-handed alpha
Helix 4	AA4	A	73	96	Right-handed alpha
Helix 5	AA5	A	103	129	Right-handed alpha
Helix 6	AA6	A	134	167	Right-handed alpha
Helix 7	AA7	A	170	201	Right-handed alpha
Helix 8	AA8	A	205	233	Right-handed alpha
Helix 9	AA9	A	244	266	Right-handed alpha
Helix 10	AB1	B	2	26	Right-handed alpha
Helix 11	AB2	B	30	39	Right-handed alpha
Helix 12	AB3	B	39	66	Right-handed alpha
Helix 13	AB4	B	72	95	Right-handed alpha
Helix 14	AB5	B	103	129	Right-handed alpha
Helix 15	AB6	B	134	166	Right-handed alpha
Helix 16	AB7	B	170	201	Right-handed alpha
Helix 17	AB8	B	205	237	Right-handed alpha
Helix 18	AB9	B	244	266	Right-handed alpha
Helix 19	AC1	C	180	197	Right-handed alpha
Helix 20	AC2	C	199	215	Right-handed alpha
Helix 21	AC3	C	218	230	Right-handed alpha
Helix 22	AC4	C	238	253	Right-handed alpha
Helix 23	AC5	C	256	267	Right-handed alpha
Helix 24	AC6	C	274	288	Right-handed alpha
Helix 25	AC7	C	290	303	Right-handed alpha
Helix 26	AC8	C	311	333	Right-handed alpha
Helix 27	AC9	C	462	482	Right-handed alpha
Helix 28	AD1	C	496	498	Right-handed 310
Helix 29	AD2	C	499	531	Right-handed alpha
Helix 30	AD3	C	542	553	Right-handed alpha
Helix 31	AD4	C	557	568	Right-handed alpha
Helix 32	AD5	C	570	585	Right-handed alpha
Helix 33	AD6	C	586	599	Right-handed alpha
Helix 34	AD7	C	609	624	Right-handed alpha
Helix 35	AD8	C	626	640	Right-handed alpha
Helix 36	AD9	C	646	662	Right-handed alpha
Helix 37	AE1	C	663	677	Right-handed alpha
Helix 38	AE2	C	684	698	Right-handed alpha
Helix 39	AE3	C	701	723	Right-handed alpha
Helix 40	AE4	D	176	197	Right-handed alpha
Helix 41	AE5	D	199	216	Right-handed alpha
Helix 42	AE6	D	218	230	Right-handed alpha
Helix 43	AE7	D	238	253	Right-handed alpha
Helix 44	AE8	D	254	268	Right-handed alpha
Helix 45	AE9	D	275	288	Right-handed alpha
Helix 46	AF1	D	291	303	Right-handed alpha
Helix 47	AF2	D	311	333	Right-handed alpha
Helix 48	AF3	D	460	481	Right-handed alpha
Helix 49	AF4	D	499	532	Right-handed alpha
Helix 50	AF5	D	539	552	Right-handed alpha
Helix 51	AF6	D	553	555	Right-handed 310
Helix 52	AF7	D	556	567	Right-handed alpha
Helix 53	AF8	D	568	574	Right-handed 310
Helix 54	AF9	D	575	585	Right-handed alpha
Helix 55	AG1	D	587	599	Right-handed alpha
Helix 56	AG2	D	611	624	Right-handed alpha
Helix 57	AG3	D	626	640	Right-handed alpha
Helix 58	AG4	D	646	660	Right-handed alpha
Helix 59	AG5	D	663	676	Right-handed alpha
Helix 60	AG6	D	685	698	Right-handed alpha
Helix 61	AG7	D	701	723	Right-handed alpha
Helix 62	AG8	E	99	111	Right-handed alpha
Helix 63	AG9	E	199	203	Right-handed 310
Helix 64	AH1	E	242	246	Right-handed 310
Helix 65	AH2	E	271	285	Right-handed alpha
Helix 66	AH3	F	104	111	Right-handed alpha
Helix 67	AH4	F	242	246	Right-handed 310
Helix 68	AH5	F	272	284	Right-handed alpha

There are 10 sheets in PDB entry 9UAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	49	first strand
Strand 2	E	257	263	parallel
Strand 3	E	76	80	anti-parallel
Strand 4	E	66	70	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	126	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	149	150	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	138	first strand
Strand 2	E	144	146	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	184	187	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	189	191	first strand
Strand 2	E	208	213	anti-parallel
Strand 3	E	233	238	parallel
Strand 4	E	226	230	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	46	first strand
Strand 2	F	258	263	parallel
Strand 3	F	76	79	anti-parallel
Strand 4	F	67	70	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	117	first strand
Strand 2	F	122	125	anti-parallel
Strand 3	F	130	138	anti-parallel
Strand 4	F	144	153	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	184	187	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	198	199	first strand
Strand 2	F	205	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	210	214	first strand
Strand 2	F	233	239	parallel
Strand 3	F	222	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9UAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9UAV